Evidence map›Paper›PMID 41290867›Full record

ArticleScientific reports2025

Machine learning driven multiomics analysis identifies disulfidptosis associated molecular subtypes in ovarian cancer.

Qiaoying Jin, Zhaobin Chang, Jinyi Liu, Luxi Yang, Yali Liu, Yonggang Lu

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Qiaoying JinSchool of Information Science and Engineering, Lanzhou University, Lanzhou, 730000, China.
Zhaobin ChangSchool of Information Science and Engineering, Lanzhou University, Lanzhou, 730000, China.
Jinyi LiuChongqing Key Laboratory of Hematology and Microenvironmentl, Second Affiliated Hospital, Army Medical University (Third Military Medical University), Chongqing, 400037, China.
Luxi YangThe Second Hospital and Clinical Medical School, Lanzhou University, Lanzhou, 730000, China.
Yali LiuThe Second Hospital and Clinical Medical School, Lanzhou University, Lanzhou, 730000, China.
Yonggang LuSchool of Information Science and Engineering, Lanzhou University, Lanzhou, 730000, China. ylu@lzu.edu.cn.

Funding

Cuiying Scientific and Technological Innovation Program of Lanzhou University Second Hospital No. CY2017-QN19Cuiying Scientific and Technological Innovation Program of Lanzhou University Second Hospital No. CY2022-QN-A11Key Research and Development Program of Gansu Provincial Science and Technology Plan No. 2023YFWA0009Key Research and Development Program of Gansu Provincial Science and Technology Plan No. 25YFWA031Natural Science Foundation of Gansu No. 23JRRA0959Natural Science Foundation of Gansu No. 25JRRA625Science and Technology Project of Gansu 24JRRA388
6 · The paper itself

Abstract

Precision oncology enables molecularly guided cancer therapy through multi-omics profiling, AI-driven classification, and biomarker-targeted interventions. Disulfidptosis has emerged as a promising therapeutic target, yet no ovarian cancer classification system currently incorporates this mechanism. The sequencing data of the samples in this study were obtained from TCGA and GEO databases. We analyzed 76 genes associated with disulfidptosis and performed consensus clustering based on their expression profiles to stratify the samples into two molecular subtypes. Differentially expressed genes (DEGs) were identified by comparing ovarian cancer tissues with normal samples. LASSO regression and random forest algorithms were then applied to screen marker genes that significantly influenced the clustering outcome. Ultimately, Ten disulfidptosis-related genes were ultimately selected to construct the predictive model. Single-cell sequencing was employed to characterize the tumor-specific expression patterns of key biomarkers. Digital spatial pathology analysis precisely mapped therapeutic target regions within tumor architectures. Immunohistochemical validation ultimately yielded clinically translatable biomarkers with diagnostic and therapeutic potential. Analysis of 76 disulfidptosis-related genes in ovarian cancer (OV) identified two molecular subtypes with distinct genomic profiles, tumor microenvironment characteristics, m6A regulator expression patterns, and clinical outcomes. Subgroup 1 showed copy number gains and immunosuppression, while Subgroup 2 exhibited higher tumor mutational burden (TMB) and immune activation. Subgroup 2 exhibited significantly higher immune infiltration, along with upregulated immune checkpoints. A 10-gene signature and CNN+GRU classifier robustly stratified patients. Single-cell and spatial transcriptomics confirmed epithelial-specific overexpression of key genes. This study identified a 10-gene signature related to disulfidptosis that is associated with distinct tumor microenvironment features, molecular heterogeneity, m6A modification patterns, and immune infiltration characteristics in ovarian cancer. Through multi-omics analyses-including single-cell and spatial transcriptomics-along with protein-level validation, our findings provide insights into the molecular landscape of ovarian cancer and suggest potential targets for future investigation into subtype-specific treatment strategies. All relevant code and analysis pipelines are publicly available at https://github.com/jinqy-lzu/Molecular_Subgroups_OV.git .

Indexed as

Machine LearningOvarian NeoplasmsBiomarkers, TumorDisulfidptosisFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticGenomicsHumansMultiomicsSingle-Cell AnalysisTranscriptomeTumor MicroenvironmentBiomarkers, TumorBiomarkersDiagnosisImmune microenvironmentMachine learningMulti-omics

Identifiers

PMID41290867
PMCPMC12647703

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.