Evidence map›Paper›PMID 41290652›Full record

ArticleNature communications2025

Biogeography and host interactions of CPR and DPANN viruses in acid mine drainage sediments.

Zhi-Liang Lin, Shao-Ming Gao, Sheng-Xuan Peng, Ling-Yun Tang, Zhen-Hao Luo, Xuan-Wen Lao, Si-Yu Zhang, Wen-Sheng Shu, Fangang Meng, Li-Nan Huang

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Divergent evolution of the PRPS enzymes across the tree of life.bioRxiv : the preprint server for biology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Zhi-Liang Lin *State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, PR China.ORCID http://orcid.org/0000-0001-7371-6518
Shao-Ming Gao *State Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, PR China.ORCID http://orcid.org/0000-0001-7219-6485
Sheng-Xuan PengState Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, PR China.
Ling-Yun TangState Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, PR China.
Zhen-Hao LuoState Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, PR China.ORCID http://orcid.org/0000-0003-2028-8788
Xuan-Wen LaoState Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, PR China.
Si-Yu ZhangState Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, PR China.
Wen-Sheng ShuSchool of Life Sciences, South China Normal University, Guangzhou, PR China.ORCID http://orcid.org/0000-0002-8743-1705
Fangang MengSchool of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou, PR China. mengfg@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-7976-9722
Li-Nan HuangState Key Laboratory for Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, PR China. eseshln@mail.sysu.edu.cn.ORCID http://orcid.org/0000-0002-4881-7920

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The CPR and DPANN superphyla are globally distributed in anoxic habitats including extreme environments. However, the biogeography and potential ecological functions of their viruses remain unexplored. Here, we recover diverse CPR/DPANN metagenomic viral genomes from 90 acid mine drainage (AMD) sediments sampled across southeast China. Our data reveal deterministic processes as the primary driver of virome assembly shaping the distinct distribution patterns of CPR and DPANN viruses. While lifestyle prediction shows higher lytic virus diversity associated with DPANN, both CPR/DPANN viruses likely use the Piggyback-the-winner (PtW) strategy to co-exist with hosts in AMD sediments, with CPR viromes exhibiting increased lysis in low host-density regimes under intensive acidity/salinity conditions. A subsequent metatranscriptomic analysis uncovers diverse functional genes encoded by CPR and DPANN viruses actively expressed in situ, potentially supplementing host metabolisms yet diverging in replication, transcription, and translation-related functions. Furthermore, partial correlation network analysis suggests that putative symbiotic hosts of the CPR/DPANN may confer protection against viral infection through enhanced antiviral defense. Our results highlight the complex interplays between viruses, DPANN and CPR organisms, and their symbiotic hosts.

Indexed as

Geologic SedimentsHost Microbial InteractionsAcidsChinaEcosystemGenome, ViralMetagenomeMetagenomicsMiningPhylogenyViromeAcids

Identifiers

PMID41290652
PMCPMC12647753

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.