Evidence map›Paper›PMID 41289379›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Inhibition of ice recrystallization with designed twistless helical repeat proteins.

Robbert J de Haas, Harley Pyles, Evelyn B Huddy, Jannick van Ossenbruggen, Chuanbao Zheng, Daniëlle van den Broek, Sanne N Giezen, Ann Carr, Asim K Bera, Alex Kang and 6 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Inhibition of ice recrystallization with designed twistless helical repeat proteins.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. De novo design of metal-oxide templating proteins.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Robbert J de Haas *Department of Physical Chemistry and Soft Matter, Wageningen University and Research, Wageningen 6078 WE, The Netherlands.ORCID 0000-0002-7587-9967
Harley Pyles *Department of Biochemistry, University of Washington, Seattle, WA 98195.
Evelyn B Huddy *Department of Biochemistry, University of Washington, Seattle, WA 98195.ORCID 0000-0002-5455-416X
Jannick van OssenbruggenLaboratory of Self-Organizing Soft Matter, Department of Chemical Engineering and Chemistry and Institute for Complex Molecular Systems, Eindhoven University of Technology, Eindhoven MB5600, The Netherlands.ORCID 0009-0003-5572-8437
Chuanbao ZhengDepartment of Physical Chemistry and Soft Matter, Wageningen University and Research, Wageningen 6078 WE, The Netherlands.ORCID 0000-0002-0866-9839
Daniëlle van den BroekLaboratory of Self-Organizing Soft Matter, Department of Chemical Engineering and Chemistry and Institute for Complex Molecular Systems, Eindhoven University of Technology, Eindhoven MB5600, The Netherlands.
Sanne N GiezenLaboratory of Self-Organizing Soft Matter, Department of Chemical Engineering and Chemistry and Institute for Complex Molecular Systems, Eindhoven University of Technology, Eindhoven MB5600, The Netherlands.ORCID 0009-0006-7171-7545
Ann CarrDepartment of Biochemistry, University of Washington, Seattle, WA 98195.
Asim K BeraDepartment of Biochemistry, University of Washington, Seattle, WA 98195.ORCID 0000-0001-9473-2912
Alex KangDepartment of Biochemistry, University of Washington, Seattle, WA 98195.ORCID 0000-0001-5487-0499
Evans BrackenbroughDepartment of Biochemistry, University of Washington, Seattle, WA 98195.
Emily JoyceDepartment of Biochemistry, University of Washington, Seattle, WA 98195.
Banumathi SankaranMolecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
David BakerDepartment of Biochemistry, University of Washington, Seattle, WA 98195.ORCID 0000-0001-7896-6217
Ilja K VoetsLaboratory of Self-Organizing Soft Matter, Department of Chemical Engineering and Chemistry and Institute for Complex Molecular Systems, Eindhoven University of Technology, Eindhoven MB5600, The Netherlands.ORCID 0000-0003-3543-4821
Renko de VriesDepartment of Physical Chemistry and Soft Matter, Wageningen University and Research, Wageningen 6078 WE, The Netherlands.

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Gregory L Hura · 2017 to 2026
$28.6M
DARPA MIMA Seedling grant HR00112420369Dutch Research Council NWO-VICI: 232.106European Research Council ERC-2020-CoG 101001965NIGMS NIH HHS P30 GM124169NIH PAN-COV P01-62-7718 GR014929Open Philanthropy Project Improving Protein Design Open Philanthropy ProjectThe Audacious Project 100 nanometer AssembliesThe Bill and Melinda Gates Foundation #INV-010680
6 · The paper itself

Abstract

Given the repetitive structure of crystalline ice, it is unsurprising that highly active ice-binding proteins (IBPs), often with beta-roll structures, also have repeating motifs. Here, we introduce a de novo designed family of ice-binding twistless alpha-helical repeat (iTHR) proteins. Each iTHR protein comprises two planar layers of parallel alpha-helices connected by loops-a structural topology not seen in native IBPs. The ice-binding helices contain an ordered array of TXXXAXXXAXX motifs, precisely spaced to complement the pyramidal {201} and secondary prism {110} planes of the ice lattice, with a designed 98.2° residue turn angle that orients all threonines uniformly toward the ice surface. iTHR proteins show high solubility, thermostability, and produce varied ice crystal morphologies depending on their intended target facet. Crucially, iTHRs exhibit ice recrystallization inhibition (IRI) at critical concentrations comparable to those of many native globular IBPs. Extensive site-specific mutagenesis shows that ice-binding activity in iTHR proteins is robust, remaining largely unaffected by changes in chemical composition. Variation in the repeat number reveals a nonmonotonic relationship to IRI activity. X-ray crystal structures of two designs confirm the intended orientation of threonines, uniformly pointing toward the ice surface. The iTHR family provides a versatile platform to systematically investigate the complex structure-activity relationships underlying protein-ice interactions.

Indexed as

Antifreeze ProteinsIceCrystallizationCrystallography, X-RayModels, MolecularProtein BindingProtein Conformation, alpha-HelicalAntifreeze ProteinsIceice binding proteinsice recrystallizationprotein design

Identifiers

PMID41289379
PMCPMC12685108

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.