Evidence map›Paper›PMID 41288767›Full record

ArticleJournal of molecular modeling2025

Combining data-driven and quantum chemical approaches to evaluate Minnesota functionals (M06-2X, MN12-SX, and MN15) for the enthalpy of formation predictions.

Ali A Khairbek, Ali Moulhim, Homam Ibraheem, Abdullah Yahya Abdullah Alzahrani, Pooventhiran Thangaiyan, Renjith Thomas

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Article in Journal of molecular modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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1 citing paper in PubMed.

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5 · Who and what money

Authors and funding

6 authors.

Ali A KhairbekCentre of Molecular Medicine and Diagnostics (COMManD), Saveetha Dental College and Hospitals, Saveetha Institute of Medical and Technical Sciences, Saveetha University, Chennai, 600077, India. alikhairbek@gmail.com.
Ali MoulhimSchool of Physics, Beijing Institute of Technology, Beijing, 100081, China.
Homam IbraheemDepartment of Physics, Faculty of Science, Latakia University, Lattakia, Syrian Arab Republic.
Abdullah Yahya Abdullah AlzahraniFaculty of Science and Arts, Department of Chemistry, King Khalid University, Abha 61413, Saudi Arabia.
Pooventhiran ThangaiyanDepartment of Mechanical Engineering, University Centre for Research & Development, Chandigarh University, Gharuan, Mohali, Punjab, India.
Renjith ThomasDepartment of Chemistry, St Berchmans College (Autonomous), Changanassery, Kerala, 686101, India. renjith@sbcollege.ac.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

contextThe accurate prediction of the standard enthalpy of formation (ΔHf°) is crucial for understanding molecular stability and reaction energetics, yet reliable experimental data are often unavailable for unstable or novel compounds. This work benchmarks three Minnesota density functionals (M06-2X, MN12-SX, and MN15) to evaluate their performance in predicting ΔHf° values for a diverse set of hydrocarbons via the atom equivalent method. Our results identify MN15 as the most accurate functional, particularly when zero-point energy (ZPE) corrections are included, achieving a mean absolute error of 1.70 kcal/mol. In contrast, MN12-SX exhibits significant sensitivity to ZPE corrections, limiting its reliability. To enhance predictive robustness, a machine learning model was developed, which demonstrated strong performance on acyclic systems but highlighted challenges in predicting strained cyclic molecules. This hybrid quantum-chemical and data-driven framework provides a validated pathway for improving the accuracy of thermochemical predictions.

methodsAll quantum chemical calculations were performed using the Gaussian 16 software package. The density functionals M06-2X, MN12-SX, and MN15 were employed in conjunction with the correlation-consistent polarized valence triple-zeta (cc-pVTZ) basis set. Single-point electronic energies and vibrational frequencies for ZPE corrections were computed at the same level of theory. Enthalpies of formation were derived using the atom equivalent method, where carbon and hydrogen energy equivalents were obtained via least-squares fitting to experimental data. Also, a machine learning workflow was implemented in Python using the scikit-learn library, wherein a random forest regressor was trained on molecular descriptors and experimental ΔHf° values, with model performance assessed via fivefold cross-validation.

Indexed as

Atom equivalent methodDensity functional theory (DFT)Enthalpy of formationHydrocarbonsM06-2XMinnesota functionalsMN12-SXMN15

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.