Evidence map›Paper›PMID 41287077›Full record

ArticleEpigenetics & chromatin2025

Loss of TET2 activity limits the ability of vitamin C to activate DNA demethylation in human HAP1 cells.

Maciej Gawronski, Marta Starczak, Aleksandra Wasilow, Tomasz Dziaman, Ryszard Olinski, Daniel Gackowski

Abstract read
In one paragraph

Article in Epigenetics & chromatin, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Maciej GawronskiDepartment of Clinical Biochemistry, Faculty of Pharmacy, Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karlowicza 24, 85-092, Bydgoszcz, Poland. m.gawronski@cm.umk.pl.ORCID http://orcid.org/0000-0002-2369-8996
Marta StarczakDepartment of Clinical Biochemistry, Faculty of Pharmacy, Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karlowicza 24, 85-092, Bydgoszcz, Poland.ORCID http://orcid.org/0000-0003-4098-7412
Aleksandra WasilowDepartment of Clinical Biochemistry, Faculty of Pharmacy, Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karlowicza 24, 85-092, Bydgoszcz, Poland.ORCID http://orcid.org/0000-0002-0546-3122
Tomasz DziamanDepartment of Clinical Biochemistry, Faculty of Pharmacy, Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karlowicza 24, 85-092, Bydgoszcz, Poland.ORCID http://orcid.org/0000-0001-6802-4832
Ryszard OlinskiDepartment of Clinical Biochemistry, Faculty of Pharmacy, Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karlowicza 24, 85-092, Bydgoszcz, Poland.ORCID http://orcid.org/0000-0001-9927-8755
Daniel GackowskiDepartment of Clinical Biochemistry, Faculty of Pharmacy, Ludwik Rydygier Collegium Medicum in Bydgoszcz, Nicolaus Copernicus University in Toruń, Karlowicza 24, 85-092, Bydgoszcz, Poland.ORCID http://orcid.org/0000-0002-7259-1511

Funding

Polish National Science Centre 2018/29/N/NZ1/00497
6 · The paper itself

Abstract

backgroundThe TET family of proteins-TET1, TET2, and TET3-are α-KG and Fe

resultsOur findings reveal that TET2 is essential for all steps of iterative oxidation, and its loss has the most significant effect on 5-hydroxymethylcytosine and 5-formylcytosine levels. Vitamin C enhances TET activity and increases the levels of these oxidation products. However, its effect in TET2 knockout cells is limited. Vitamin C increased cytosine modification levels in TET2KO cells, but not to the extent observed in treated wild-type cells, indicating incomplete compensation for TET2 loss.

conclusionsOur results demonstrated that each TET protein has a distinct, separate contribution to generating active demethylation products. The absence of individual TET paralog is linked with the specific pattern of active demethylation products in DNA, which is preserved after vitamin C treatment. Therefore, the deletion of one of the TET enzymes cannot be compensated for by the increased activity of the other TET family members, highlighting the unique roles of each TET paralog in epigenetic regulation.

Indexed as

Ascorbic AcidDioxygenasesDNA-Binding ProteinsDNA DemethylationProto-Oncogene Proteins5-MethylcytosineCell Line, TumorCytosineDNA MethylationHumans5-hydroxymethylcytosine5-MethylcytosineAscorbic AcidCytosineDioxygenasesDNA-Binding ProteinsProto-Oncogene ProteinsTET2 protein, humanActivityDemethylationDNAHAP1KnockoutssiRNATETVitamin C

Identifiers

PMID41287077
PMCPMC12642257

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.