Evidence map›Paper›PMID 41286228›Full record

ArticleJournal of computer-aided molecular design2025

Calibrating the gap: a user-friendly aqueous [Formula: see text] prediction protocol for organic acids, alcohols, and amines.

Amílcar Duque-Prata, Carlos Serpa, Pedro J S B Caridade

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Article in Journal of computer-aided molecular design, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Amílcar Duque-Prata *CQC-IMS, Department of Chemistry, University of Coimbra, Rua Larga, Coimbra, 3004-535, Coimbra, Portugal.
Carlos Serpa *CQC-IMS, Department of Chemistry, University of Coimbra, Rua Larga, Coimbra, 3004-535, Coimbra, Portugal.
Pedro J S B Caridade *CQC-IMS, Department of Chemistry, University of Coimbra, Rua Larga, Coimbra, 3004-535, Coimbra, Portugal. pedrojcaridade@uc.pt.

Funding

Fundação para a Ciência e a Tecnologia UIDB/00313/2025, UIDP/00313/2025 and LA/P/0056/2020
6 · The paper itself

Abstract

This study introduces a simple and computationally efficient protocol for estimating the values of aqueous [Formula: see text] in three major classes of functional groups: organic acids, alcohols, and amines. Although direct density functional theory calculations yielded notable discrepancies from experimental values, the application of class-specific linear calibration significantly improved predictive accuracy. The correlation coefficients increased from 0.67 (uncalibrated) to 0.98 (calibrated), with mean absolute errors of 0.51, 0.69 and 0.37 [Formula: see text] units for acids, alcohols, and amines, respectively. The observed class-dependent linear trends validate the chemical consistency of the approach, even in the presence of structural diversity. Correlation analysis showed that predictive errors are largely uncorrelated with standard molecular descriptors, indicating that model performance is predominantly governed by the functional group of the ionizable proton. By avoiding subclass distinctions and relying solely on functional group identity, the method maintains simplicity and broad applicability without sacrificing accuracy. Most predictions fall within [Formula: see text] [Formula: see text] units, supporting the robustness of the protocol. The approach offers a practical framework for systematic estimation of aqueous [Formula: see text], which is a compelling option for routine prediction of aqueous [Formula: see text] in various chemical contexts.

Indexed as

AcidsAlcoholsAminesOrganic ChemicalsWaterCalibrationDensity Functional TheoryModels, ChemicalAcidsAlcoholsAminesOrganic ChemicalsWaterDensity functional theoryOrganic compoundspKa estimationUser-friendly calibration

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.