Evidence map›Paper›PMID 41285867›Full record

ArticleScientific reports2025

A novel tumor microenvironment-related gene signature for prognostic prediction of intrahepatic cholangiocarcinoma.

Dongyao Xu, Hongtan Lin, Xiaoqiu Ma, Yingming Sun, Wei Wang, Linpei Wang

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Dongyao Xu *Department of Hepatobiliary and Pancreatic Surgery, The Second Affiliated Hospital of Fujian Medical University, No. 950, Donghai Street, Fengze District, Quanzhou, Fujian, 362000, China.
Hongtan Lin *Department of Surgical Oncology, Sanming First Hospital Affiliated to Fujian Medical University, Sanming, Fujian, China.
Xiaoqiu Ma *Department of Health Medicine, The 910th Hospital of People's Liberation Army, Quanzhou, Fujian, China.
Yingming SunDepartment of Medical and Radiation Oncology, Sanming First Hospital, Fujian Medical University, Sanming, Fujian, China.
Wei WangDepartment of Hepatobiliary and Pancreatic Surgery, The Second Affiliated Hospital of Fujian Medical University, No. 950, Donghai Street, Fengze District, Quanzhou, Fujian, 362000, China. Wangwei9909@fjmu.edu.cn.
Linpei WangDepartment of Hepatobiliary and Pancreatic Surgery, The Second Affiliated Hospital of Fujian Medical University, No. 950, Donghai Street, Fengze District, Quanzhou, Fujian, 362000, China. wlp@fjmu.edu.cn.

Funding

Natural Science Foundation of Fujian Province 2024J01665Sanming City Science and Technology Plan Project 2023-S-105Startup Fund for Scientific Research, Fujian Medical University 2022QH1110
6 · The paper itself

Abstract

Intrahepatic cholangiocarcinoma (ICCA) is a highly aggressive bile duct cancer with limited treatment options and poor prognosis. This study aims to develop a gene signature-based model to predict ICCA patient survival. We identified differentially expressed genes (DEGs) from an ICCA mRNA microarray dataset and applied survival, Cox, and LASSO regression analyses to select key genes for constructing the GPSICCA risk score model. The model was then validated in two additional ICCA cohorts, and its relationship with the tumor microenvironment (TME) was analyzed. Additionally, multiplex fluorescent immunohistochemistry (mfIHC) was conducted to examine the expression of key genes in ICCA samples. The expression of COL4A1, GULP1, ITGA6, and STC1 was used to construct the gene set-based prognostic signature for ICCA (GPSICCA) risk score model, and mfIHC confirmed their expression in ICCA samples. The model effectively stratified patients into high- and low-risk groups, with high-risk patients showing significantly worse survival. The GPSICCA score was positively correlated with stromal and immune scores, suggesting its predictive capability is related to TME involvement in ICCA. The GPSICCA model is a strong predictor of survival in ICCA patients and could help guide treatment strategies and identify potential therapeutic targets.

Indexed as

Bile Duct NeoplasmsCholangiocarcinomaTranscriptomeTumor MicroenvironmentAgedBiomarkers, TumorFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMiddle AgedPrognosisBiomarkers, TumorImmune gene signatureSurvivalWeighted gene co-expression network analysis

Identifiers

PMID41285867
PMCPMC12644728

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.