Evidence map›Paper›PMID 41285778›Full record

ArticleNature communications2025

The sex-biased chromatin modifier SMC1A promotes autoimmunity by shaping inflammatory pathways in patients with SLE.

Despoina Kosmara, Sofia Papanikolaou, Chrysoula Stathopoulou, Dionysios Papamatheakis, Giannis Vatsellas, Arianna Cimmarrusti, Aggelos Banos, Prodromos Sidiropoulos, Matthieu D Lavigne, Panayotis Verginis and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Despoina Kosmara *Institute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece.
Sofia Papanikolaou *Institute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece.
Chrysoula StathopoulouInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece.
Dionysios PapamatheakisInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece.ORCID http://orcid.org/0000-0002-3107-9335
Giannis VatsellasGreek Genome Center, Biomedical Research Foundation Academy of Athens, Athens, Greece.ORCID http://orcid.org/0000-0002-1631-1060
Arianna CimmarrustiInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece.ORCID http://orcid.org/0009-0007-7370-4091
Aggelos BanosCenter of Clinical, Experimental Surgery and Translational Research, Biomedical Research Foundation Academy of Athens, Athens, Greece.
Prodromos SidiropoulosInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece.
Matthieu D LavigneInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece.ORCID http://orcid.org/0000-0003-1543-8745
Panayotis VerginisInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece.
Dimitrios BoumpasCenter of Clinical, Experimental Surgery and Translational Research, Biomedical Research Foundation Academy of Athens, Athens, Greece.
Charalampos SpilianakisInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece.ORCID http://orcid.org/0000-0003-0921-1923
Dimitris KonstantopoulosInstitute of Bioinnovation, Biomedical Sciences Research Center "Alexander Fleming", Athens, Greece.ORCID http://orcid.org/0000-0003-2142-3021
Christoforos NikolaouInstitute of Bioinnovation, Biomedical Sciences Research Center "Alexander Fleming", Athens, Greece.
George BertsiasInstitute of Molecular Biology and Biotechnology (IMBB), Foundation for Research and Technology-Hellas (FORTH), Heraklion, Greece. gbertsias@uoc.gr.ORCID http://orcid.org/0000-0001-5299-1406

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 742390
6 · The paper itself

Abstract

A strong female bias is characteristic of systemic lupus erythematosus (SLE), the prototypic systemic autoimmune disease. Here, through an unbiased transcriptome analysis, we report a pronounced female-biased expression of the cohesin complex subunit SMC1A, a genome architectural factor, in monocytes from SLE patients compared to those from healthy individuals or patients with ankylosing spondylitis, a non-sex-biased autoimmune disorder. Integration of SMC1A binding, chromatin activity, and accessibility in lupus-like monocytes reveals extensive SMC1A redistribution to active enhancers of immune/inflammatory genes, inducing their transcription. SLE monocyte transcriptomes demonstrate significant enrichment of female-biased immune/inflammatory genes among SMC1A targets, accompanied by increased secretion of cytokines including IL6, with enhanced SMC1A binding at their enhancers in lupus-like monocytes. Collectively, our study highlights SMC1A as a female-biased chromatin modifier that acquires a specific regulatory function during lupus, accentuating inflammatory pathways and providing mechanistic insights into the female-biased predisposition to SLE and other autoimmune diseases.

Indexed as

AutoimmunityCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneLupus Erythematosus, SystemicAdultFemaleGene Expression ProfilingHumansInflammationMaleMonocytesSex FactorsSpondylitis, AnkylosingStructural Maintenance of Chromosome Protein 1TranscriptomeCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneStructural Maintenance of Chromosome Protein 1

Identifiers

PMID41285778
PMCPMC12644779

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.