Evidence map›Paper›PMID 41284350›Full record

ArticleThe Plant journal : for cell and molecular biology2025

A retrotransposon insertion upstream of Arabidopsis thaliana CRK8 receptor-like kinase modulates a trade-off between pathogen defense and salt tolerance.

Joris Macquet, Thomas Badet, Pedro Carvalho-Silva, Matilda Zaffuto, Sylvain Raffaele

Abstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Joris MacquetLaboratoire des Interactions Plantes-Microbes-Environnement (LIPME), Université de Toulouse, INRAE, CNRS, F-31326, Castanet-Tolosan, France.
Thomas BadetLaboratoire des Interactions Plantes-Microbes-Environnement (LIPME), Université de Toulouse, INRAE, CNRS, F-31326, Castanet-Tolosan, France.ORCID 0000-0001-6130-441X
Pedro Carvalho-SilvaLaboratoire des Interactions Plantes-Microbes-Environnement (LIPME), Université de Toulouse, INRAE, CNRS, F-31326, Castanet-Tolosan, France.
Matilda ZaffutoLaboratoire des Interactions Plantes-Microbes-Environnement (LIPME), Université de Toulouse, INRAE, CNRS, F-31326, Castanet-Tolosan, France.
Sylvain RaffaeleLaboratoire des Interactions Plantes-Microbes-Environnement (LIPME), Université de Toulouse, INRAE, CNRS, F-31326, Castanet-Tolosan, France.ORCID 0000-0002-2442-9632

Funding

Agence Nationale de la Recherche ANR-10-LABX-41Agence Nationale de la Recherche ANR-11-IDEX-0002-02Agence Nationale de la Recherche ANR-19-CE20-15Agence Nationale de la Recherche ANR-21-CE20-10Agence Nationale de la Recherche ANR-21-CE20-30European Research Council ERC-StG-336808Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement
6 · The paper itself

Abstract

In response to necrotrophic fungal pathogens, plants often display quantitative disease resistance (QDR), an immune response with complex genetic determinants. Due to their diversity and small phenotypic effect, the genetic bases of QDR are challenging to characterize. Here, we used genome-wide association mapping in Arabidopsis thaliana natural populations to identify novel determinants of QDR against the fungal pathogen Sclerotinia sclerotiorum. We found that presence-absence polymorphism of the AT4TE56270 Copia transposable element (TE) upstream of the cysteine-rich receptor-like kinase 8 (CRK8) gene is associated with QDR. The presence of the TE associates with higher CRK8 expression in healthy and inoculated plants and increased QDR. The constitutive knockdown of CRK8 reduced QDR, hydrogen peroxide production, and the expression of defense genes upon inoculation. Transcriptome analysis revealed altered defense pathways and salt responses in CRK8 mutants, including impaired glutathione and camalexin biosynthesis, likely contributing to disease susceptibility. Mutants in CRK8 showed altered seed germination on salt, and the absence of AT4TE56270 is associated with enhanced seed germination under salt stress in A. thaliana natural populations. These results reveal a trade-off between salt tolerance and defense against S. sclerotiorum associated with presence-absence polymorphism of a TE.

Indexed as

ArabidopsisArabidopsis ProteinsAscomycotaPlant DiseasesProtein KinasesRetroelementsSalt ToleranceDisease ResistanceGene Expression Regulation, PlantGenome-Wide Association StudyArabidopsis ProteinsProtein KinasesRetroelementsArabidopsis thalianafungal pathogenplant immunityreceptor‐like kinasesalt toleranceSclerotinia sclerotiorumtransposable element

Identifiers

PMID41284350
PMCPMC12643125

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.