Evidence map›Paper›PMID 41282134›Full record

ArticleResearch square2025

Gut microbiota: a new factor modulating the immunizing potential of viral and cancer vaccines.

Agathe Carrier, Paolo Manghi, Carolina Alves Costa Silva, Imran Lahmar, Deborah Suissa, Valerio Iebba, Andrew A Almonte, Nadim J Ajami, Roxanne Birebent, Caroline Laheurte and 38 more

Abstract readPreprint
In one paragraph

Article in Research square, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

48 authors.

Agathe CarrierUniversité Paris-Saclay, Faculté de Médecine, Le Kremlin-Bicêtre, France.ORCID 0000-0002-3177-5736
Paolo ManghiDepartment CIBIO, University of Trento, Trento, Italy.ORCID 0000-0003-0846-6529
Carolina Alves Costa SilvaUniversité Paris-Saclay, Faculté de Médecine, Le Kremlin-Bicêtre, France.
Imran LahmarUniversité Paris-Saclay, Faculté de Médecine, Le Kremlin-Bicêtre, France.
Deborah SuissaUniversité Paris-Saclay, Faculté de Médecine, Le Kremlin-Bicêtre, France.
Valerio IebbaGustave Roussy Cancer Campus (GRCC), Clinicobiome, 94800 Villejuif Cedex, France.ORCID 0000-0002-0716-306X
Andrew A AlmonteGustave Roussy Cancer Campus (GRCC), Clinicobiome, 94800 Villejuif Cedex, France.
Nadim J AjamiPlatform for Innovative Microbiome and Translational Research, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0002-3808-8576
Roxanne BirebentUniversité Paris-Saclay, Faculté de Médecine, Le Kremlin-Bicêtre, France.
Caroline LaheurteUniversité de Franche-Comté, EFS, INSERM, UMR 1098 RIGHT, F-25000 Besançon, France.
Gerty SchreibeltMedical BioSciences, Radboud university medical center, Nijmegen, the Netherlands.ORCID 0000-0002-0156-8365
Louis LemantGustave Roussy Cancer Campus (GRCC), Clinicobiome, 94800 Villejuif Cedex, France.
Jean-Eudes FahrnerUniversité Paris-Saclay, Faculté de Médecine, Le Kremlin-Bicêtre, France.ORCID 0000-0001-6581-8418
Eric de SousaImmunoTherapy/ImmunoSurgery, Champalimaud Centre for the Unknown, Lisboa, Portugal.ORCID 0000-0001-6582-7365
Franck BerthierLife Sciences, R&D BioMérieux, Marcy l'Etoile, France.
Juliette VillemonteixLaboratoire d'Immunologie et Histocompatibilité, Hôpital Saint-Louis, AP-HP, Université de Paris, 75010 Paris, France.ORCID 0000-0002-6601-7820
Mathieu F ChevalierINSERM UMR 976, Institut de Recherche Saint-Louis, Université Paris Cité, Paris, France.ORCID 0000-0002-5601-2217
Gianmarco PiccinnoDepartment CIBIO, University of Trento, Trento, Italy.ORCID 0000-0003-1947-1817
Didier HocquetUniversité de Franche-Comté, UMR 6249 Chrono-environnement, F-25000 Besançon, France; CHU de Besançon, Hygiène Hospitalière, F-25000 Besançon, France.ORCID 0000-0002-4192-7238
Isabelle LebharGustave Roussy Cancer Campus (GRCC), Clinicobiome, 94800 Villejuif Cedex, France.
Markus MaeurerImmunoTherapy/ImmunoSurgery, Champalimaud Centre for the Unknown, Lisboa, Portugal.ORCID 0000-0002-8436-8077
Sophie Caillat-ZucmanLaboratoire d'Immunologie et Histocompatibilité, Hôpital Saint-Louis, AP-HP, Université de Paris, 75010 Paris, France.ORCID 0000-0002-4535-3550
Sebastian KoboldDivision of Clinical Pharmacology, LMU University Hospital, Munich, LMU Munich, 80336 Munich, Germany.ORCID 0000-0002-5612-4673
Guido KroemerCentre de Recherche des Cordeliers, INSERM U1138, Équipe Labellisée - Ligue Nationale contre le Cancer, Université Paris Cité, Sorbonne Université, Paris, France.ORCID 0000-0002-9334-4405
Lisa DerosaUniversité Paris-Saclay, Faculté de Médecine, Le Kremlin-Bicêtre, France.ORCID 0000-0003-0527-2964
Odile LaunayUniversité Paris Cité; Inserm CIC 1417, I-Reivac; APHP, Hôpital Cochin, Paris, France.
Dietmar H PieperMicrobial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, 38124 Braunschweig Germany.
Marius VitalMicrobial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, 38124 Braunschweig Germany.
Antonio Santos-PeralDivision of Clinical Pharmacology, LMU University Hospital, Munich, LMU Munich, 80336 Munich, Germany.
Magdalena ZauchaDivision of Clinical Pharmacology, LMU University Hospital, Munich, LMU Munich, 80336 Munich, Germany.ORCID 0000-0002-3590-1525
María García-BengoaDivision of Clinical Pharmacology, LMU University Hospital, Munich, LMU Munich, 80336 Munich, Germany.
Julia Thorn-SesholdDivision of Clinical Pharmacology, LMU University Hospital, Munich, LMU Munich, 80336 Munich, Germany.ORCID 0000-0002-4879-4159
Helen StirlingDivision of Clinical Pharmacology, LMU University Hospital, Munich, LMU Munich, 80336 Munich, Germany.
Encouse GoldenDepartment of Radiation Oncology, Weill Cornell Medicine, New York.
Kalijn F BolMedical BioSciences, Radboud university medical center, Nijmegen, the Netherlands.
Michael G WhiteDepartment of Colon & Rectal Surgery, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0001-5022-5505
Pranoti V SahasrabhojaneDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Yasmine M HoballahDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Jillian S LoshDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0003-4648-6512
Carolyn R DePinhoDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Eleonora DondossolaDepartment of Genitourinary Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
I Jolanda M de VriesMedical BioSciences, Radboud university medical center, Nijmegen, the Netherlands.ORCID 0000-0002-8653-4040
Olivier AdoteviUniversité de Franche-Comté, EFS, INSERM, UMR 1098 RIGHT, F-25000 Besançon, France.ORCID 0000-0002-7742-136X
Jennifer A WargoPlatform for Innovative Microbiome and Translational Research, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.ORCID 0000-0003-3438-7576
Simon RothenfußerDivision of Clinical Pharmacology, LMU University Hospital, Munich, LMU Munich, 80336 Munich, Germany.ORCID 0000-0003-1151-7614
Nicola SegataDepartment CIBIO, University of Trento, Trento, Italy.ORCID 0000-0002-1583-5794
Silvia FormentiDepartment of Radiation Oncology, Weill Cornell Medicine, New York.ORCID 0000-0002-8227-8924
Laurence ZitvogelUniversité Paris-Saclay, Faculté de Médecine, Le Kremlin-Bicêtre, France.ORCID 0000-0003-1596-0998

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DIANE BODURKA · 1985 to 2026
$290.8M
Exploiting public metagenomic data to uncover cancer-microbiome relationshipsU01CA230551 · NCI · GRADUATE SCHOOL OF PUBLIC HEALTH AND HEALTH POLICY · PI WALDRON, LEVI · 2019 to 2019
$464k
NCI NIH HHS P30 CA016672NCI NIH HHS U01 CA230551
6 · The paper itself

Abstract

Vaccines represent a major public health intervention against infectious diseases and potentially cancer. Surrogate markers of vaccine efficacy usually rely on neutralizing antibody titers afflicted by high interindividual variabilities. Automated multiplexed T cell assays currently allow to test the clinical relevance of T lymphocyte responses during vaccine rollout. We examined cellular and/or humoral immune responses in five independent cohorts of health care workers, young healthy individuals and patients with cancer (melanoma or lung cancer) receiving various immunizing formulations (non-replicating, viral/tumoral, mRNA/peptides/cellular/viral particles). Here we show that about 20% of vaccinees to non-replicating formulations fail to mount protective antibody and Th1/Tc1 responses while 9% receiving a live vaccine were hyperresponders. Vaccine outliers could at least in part be attributed to gut dysbiosis at baseline, evaluated by shotgun metagenomics-based machine learning or the TOPOSCORE. These findings highlight the requirement of diagnostic tools to identify intestinal dysbiosis, as well as microbiota-centered interventions to optimize the efficiency of mass vaccinations.

Indexed as

cancerCOVID-19Dendritic cellsMetaPhlAn 4MicrobiotapeptidesT cell assaysTh1Th2Vaccines

Identifiers

PMID41282134
PMCPMC12636744

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.