Evidence map›Paper›PMID 41281197›Full record

ArticleArXiv2025

Generalizing matrix representations to fully heterochronous ranked tree shapes.

Chris Jennings-Shaffer, Cherith Chen, Julia A Palacios, Frederick A Matsen Iv

Abstract readPreprint
PubMed Full text at PMC
In one paragraph

Article in ArXiv, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Chris Jennings-ShafferFred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Cherith ChenDepartment of Statistics, Stanford University, Stanford, CA.
Julia A PalaciosDepartment of Statistics, Stanford University, Stanford, CA.
Frederick A Matsen IvFred Hutchinson Cancer Research Center, Seattle, Washington, USA.

Funding

Blending deep learning with probabilistic mechanistic models to predict and understand the evolution and function of adaptive immune receptorsR01AI146028 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MATSEN, FREDERICK ALBERT · 2019 to 2024
$3.4M
High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0M
Novel Coalescent Approaches for Studying Evolutionary ProcessesR35GM148338 · NIGMS · STANFORD UNIVERSITY · PI Julia Palacios · 2023 to 2026
$1.5M
NIAID NIH HHS R01 AI146028NIGMS NIH HHS R35 GM148338NIH HHS S10 OD028685
6 · The paper itself

Abstract

Phylogenetic tree shapes capture fundamental signatures of evolution. We consider "ranked" tree shapes, which are equipped with a total order on the internal nodes compatible with the tree graph. Recent work has established an elegant bijection of ranked tree shapes and a class of integer matrices, called

Identifiers

PMID41281197
PMCPMC12636760

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.