Evidence map›Paper›PMID 41280084›Full record

ArticlebioRxiv : the preprint server for biology2025

JMJD1B-mediated FEN1 demethylation allows timely switching of Okazaki fragment maturation core enzymes to avoid mutagenic flap ligation by PARP1-LIG3.

Yao Yan, Guojun Shi, Kejiao Li, Yi Lei, Yixing Wang, Yingying Wang, Songbai Liu, Anthony Fernandez, Tingting Zhou, Evan Wang and 6 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yao YanDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Guojun ShiDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Kejiao LiDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Yi LeiDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Yixing WangDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Yingying WangDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Songbai LiuDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Anthony FernandezDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Tingting ZhouDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Evan WangDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Mian ZhouDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Yuan HangDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Zhuo LiDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Zhigang GuoDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Li ZhengDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.
Binghui ShenDepartment of Cancer Genetics and Epigenetics, City of Hope Beckman Research Institute, 1500 East Duarte Road, Duarte, California, USA.

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI XIWEI WU · 1985 to 2026
$86.3M
Function Analysis of FEN-1 Nuclease in Genome StabilityR01CA073764 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI BINGHUI SHEN · 2002 to 2026
$7.9M
Functional Analysis of Structure Specific Nucleases in Genome Stability and CancersR50CA211397 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI ZHENG, LI · 2016 to 2025
$3.3M
Okazaki fragment maturation: mutagenesis and cell survivalR01CA279840 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI BINGHUI SHEN · 2023 to 2026
$2.2M
NCI NIH HHS P30 CA033572NCI NIH HHS R01 CA073764NCI NIH HHS R01 CA279840NCI NIH HHS R50 CA211397
6 · The paper itself

Abstract

Efficient and faithful Okazaki fragment maturation (OFM) depends on the PCNA-coordinated actions of core enzymes Polδ, FEN1, and LIG1. We demonstrate that Polδ, FEN1, and LIG1 sequentially but not simultaneously bind to PCNA in mammalian cells. The association of FEN1 with PCNA, which lies at the center of this orderly program, is mediated by FEN1 R192 methylation, which is also crucial for preventing premature loading of LIG1. Conversely, FEN1 demethylation by the recently identified arginine demethylase JMJD1B promotes FEN1 dissociation from PCNA and LIG1 recruitment. Disruption of the sequential PCNA binding program in R192Q or

Identifiers

PMID41280084
PMCPMC12632346

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.