Evidence map›Paper›PMID 41279983›Full record

ArticlebioRxiv : the preprint server for biology2025

Deep learning-driven characterization of single cell tuning in primate visual area V4 supports topological organization.

Konstantin F Willeke, Kelli Restivo, Katrin Franke, Arne F Nix, Santiago A Cadena, Tori Shinn, Cate Nealley, Gabrielle Rodriguez, Saumil Patel, Alexander S Ecker and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Konstantin F WillekeInstitute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany.ORCID 0000-0003-4445-6408
Kelli RestivoDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0001-5754-4883
Katrin FrankeDepartment of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US.ORCID 0000-0002-8649-4835
Arne F NixInstitute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany.ORCID 0000-0003-1780-1448
Santiago A CadenaInstitute of Computer Science and Campus Institute Data Science, University of Göttingen, Germany.ORCID 0000-0002-7508-4443
Tori ShinnDepartment of Pediatrics; Allergy & Immunology, Baylor College of Medicine, Houston, Texas, USA.
Cate NealleyDepartment of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US.
Gabrielle RodriguezDepartment of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US.
Saumil PatelDepartment of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US.ORCID 0000-0002-2386-8940
Alexander S EckerInstitute of Computer Science and Campus Institute Data Science, University of Göttingen, Germany.ORCID 0000-0003-2392-5105
Fabian H SinzInstitute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany.ORCID 0000-0002-1348-9736
Andreas S ToliasDepartment of Ophthalmology, Byers Eye Institute, Stanford University School of Medicine, Stanford, CA, US.ORCID 0000-0002-4305-6376

Funding

Generation of novel cell type specific mouse genetic toolsU19MH114830 · NIMH · ALLEN INSTITUTE · PI ZENG, HONGKUI · 2017 to 2021
$64.7M
VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
Probabilistic coding in cortical populationsR01EY026927 · NEI · BAYLOR COLLEGE OF MEDICINE · PI MA, WEI JI, TOLIAS, ANDREAS · 2017 to 2021
$1.9M
NEI NIH HHS P30 EY002520NEI NIH HHS R01 EY026927NIMH NIH HHS U19 MH114830
6 · The paper itself

Abstract

Deciphering the brain's structure-function relationship is key to understanding the neuronal mechanisms underlying perception and cognition. The cortical column, a vertical organization of neurons with similar functions, is a classic example of primate neocortex structure-function organization. While columns have been identified in primary sensory areas using parametric stimuli, their prevalence across higher-level cortex is debated, particularly regarding complex tuning in natural image space. However, a key hurdle in identifying columns is characterizing the complex, nonlinear tuning of neurons to high-dimensional sensory inputs. Building on prior findings of topological organization for features like color and orientation, we investigate functional clustering in macaque visual area V4 in non-parametric natural image space, using large-scale recordings and deep learning-based analysis. We combined linear probe recordings with deep learning methods to systematically characterize the tuning of >1,200 V4 neurons using

Identifiers

PMID41279983
PMCPMC12637473

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.