Evidence map›Paper›PMID 41279881›Full record

ArticlebioRxiv : the preprint server for biology2025

Commensal

Romana R Gerner, Gregory T Walker, Suzi M Klaus, Karine Melchior, Suzana Hossain, Kareem Siada, Chia-Yun Hsu, Francisco J Albicoro, William Santus, Rasika Patkar and 18 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Romana R GernerDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0003-2377-6509
Gregory T WalkerDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-3888-8143
Suzi M KlausDepartment of Microbiology and Molecular Genetics, University of California, Irvine School of Medicine, Irvine, CA 92697, USA.
Karine MelchiorDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0003-4218-9991
Suzana HossainDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.
Kareem SiadaDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0009-0001-8611-7757
Chia-Yun HsuDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-5283-1020
Francisco J AlbicoroDepartment of Microbiology and Immunology, Lewis Katz School of Medicine, Temple University, Philadelphia, PA, USA.
William SantusDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA.ORCID 0000-0001-5940-3769
Rasika PatkarSchool of Biological Sciences, University of California, San Diego, La Jolla, California, USA.
Marvic Carrillo-TerrazasDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-8830-5161
Grant J NortonDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0003-0264-1154
Flavian ThelenSchool of Biological Sciences, University of California, San Diego, La Jolla, California, USA.ORCID 0000-0002-9372-1995
Araceli Perez-LopezDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-5399-1958
Purnima SharmaDepartment of Microbiology and Molecular Genetics, University of California, Irvine School of Medicine, Irvine, CA 92697, USA.
Marcus P WongDepartment of Microbiology and Molecular Genetics, University of California, Irvine School of Medicine, Irvine, CA 92697, USA.ORCID 0000-0001-6554-2976
Victor LeiDepartment of Microbiology and Molecular Genetics, University of California, Irvine School of Medicine, Irvine, CA 92697, USA.
Richard M RansohoffThird Rock Ventures, Boston, MA 02215.
David D LoDivision of Biomedical Sciences, University of California, Riverside, School of Medicine 900 University Ave, Riverside, CA 92521.
Thomas E LaneDepartment of Neurobiology and Behavior, University of California, Irvine 92697-3900, USA.ORCID 0000-0003-0392-0825
Andrea ReboldiDepartment of Pathology, UMass Chan Medical School, Worcester, MA, USA.ORCID 0000-0003-1137-6292
Sean-Paul NuccioDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-9683-9278
Judith BehnsenDepartment of Microbiology and Immunology, University of Illinois Chicago, Chicago, IL 60612, USA.ORCID 0000-0003-0109-1090
Elina I ZunigaSchool of Biological Sciences, University of California, San Diego, La Jolla, California, USA.ORCID 0000-0001-8699-1623
Li-Fan LuSchool of Biological Sciences, University of California, San Diego, La Jolla, California, USA.ORCID 0000-0002-9727-0036
Çagla TükelDepartment of Microbiology and Immunology, Lewis Katz School of Medicine, Temple University, Philadelphia, PA, USA.ORCID 0000-0001-7073-0226
Hiutung ChuDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-7489-0446
Manuela RaffatelluDivision of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0001-6487-4215

Funding

San Diego Digestive Diseases Research CenterP30DK120515 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LARS ECKMANN, Bernd G. Schnabl · 2019 to 2026
$10.8M
RESEARCH IN INFECTIOUS DISEASEST32AI007036 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NIZET, VICTOR · 1985 to 2025
$9.2M
U of Calif, San Diego Neuroscience Microscopy ImagingP30NS047101 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GLEESON, JOSEPH G, ZHENG, BINHAI · 2003 to 2022
$9.0M
Role of microRNAs in regulatory T cell-mediated immunological tolerance and T celR01AI108651 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LU, LI-FAN · 2014 to 2024
$4.0M
Development of siderophore-based vaccines against non-typhoidal Salmonella infectionR01AI114625 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NOLAN, ELIZABETH M, RAFFATELLU, MANUELA · 2015 to 2019
$1.9M
Nutritional immunity during Salmonella infectionR37AI126277 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Manuela Raffatellu · 2023 to 2026
$1.8M
NIAID NIH HHS R01 AI108651NIAID NIH HHS R01 AI114625NIAID NIH HHS R37 AI126277NIAID NIH HHS T32 AI007036NIDDK NIH HHS P30 DK120515NINDS NIH HHS P30 NS047101
6 · The paper itself

Abstract

The gut microbiota plays a pivotal role in shaping mucosal immunity, yet the specific microbes contributing to lymphoid tissue development remain poorly defined. Here, we identify

Identifiers

PMID41279881
PMCPMC12632513

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.