Evidence map›Paper›PMID 41279040›Full record

ArticlebioRxiv : the preprint server for biology2025

Multi-immersion Oblique Plane Microscope (miOPM): A reconfigurable platform for high-resolution Light-Sheet Fluorescence Microscopy.

Bingying Chen, Alfred Millett-Sikking, Seweryn Gałecki, Stephan Daetwyler, Jenny Jiou, Jim Monistrol, Qionghua Shen, Felix Zhou, Hsin-Yu Lin, Edward Jenkins and 17 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Bingying ChenLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.
Alfred Millett-SikkingCalico Life Sciences LLC, South San Francisco, CA, 94080, U.S.A.
Seweryn GałeckiLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.
Stephan DaetwylerLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.ORCID 0000-0002-7444-4734
Jenny JiouCenter for Alzheimer's and Neurodegenerative Diseases, Peter O'Donnell Jr. Brain Institute, UT Southwestern Medical Center, Dallas, TX 75390, U.S.A.
Jim MonistrolCenter for Alzheimer's and Neurodegenerative Diseases, Peter O'Donnell Jr. Brain Institute, UT Southwestern Medical Center, Dallas, TX 75390, U.S.A.
Qionghua ShenLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.
Felix ZhouLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.
Hsin-Yu LinLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.
Edward JenkinsKennedy Institute of Rheumatology, Nuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences (NDORMS), University of Oxford, Oxford, OX3 7FY, U.K.
Miriam C SteinDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.
Madeleine Marlar-PaveyDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.
Gabriel SturmCalico Life Sciences LLC, South San Francisco, CA, 94080, U.S.A.ORCID 0000-0002-7280-4310
Alexander L LiCalico Life Sciences LLC, South San Francisco, CA, 94080, U.S.A.
Qiaosi TangCalico Life Sciences LLC, South San Francisco, CA, 94080, U.S.A.
Brian FengCalico Life Sciences LLC, South San Francisco, CA, 94080, U.S.A.
Ulises DiazDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA 94158, U.S.A.
Yannan ChenDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA 94158, U.S.A.ORCID 0000-0002-2959-2885
Ary ShaliziCalico Life Sciences LLC, South San Francisco, CA, 94080, U.S.A.
Astrid GillichCalico Life Sciences LLC, South San Francisco, CA, 94080, U.S.A.
Jonathan R FriedmanDepartment of Cell Biology, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.ORCID 0000-0001-8155-2429
Raju TomerDepartment of Biomedical Sciences, Columbia University, New York, NY, 10027, U.S.A.
Bo-Jui ChangLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.
Wallace F MarshallDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA 94158, U.S.A.
Sarah ShahmoradianCenter for Alzheimer's and Neurodegenerative Diseases, Peter O'Donnell Jr. Brain Institute, UT Southwestern Medical Center, Dallas, TX 75390, U.S.A.
Kevin M DeanLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.
Reto FiolkaLyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, 75390, U.S.A.

Funding

Technical Development Unit 2: Intelligent Hyperspectral Imaging of Subcellular Molecular States at the Whole Organ LevelU54CA268072 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI SEAN J MORRISON · 2021 to 2026
$9.1M
UTSW-UNC Center for Cell Signaling AnalysisRM1GM145399 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Kevin Michael Dean, Klaus M. Hahn · 2022 to 2026
$6.2M
Spatial determinants in lipid metabolic organization at the sub-organelle levelR35GM119768 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Mike Henne · 2016 to 2026
$4.1M
Transformative microscopes to image across spatiotemporal scalesR35GM133522 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Reto Paul Fiolka · 2019 to 2026
$3.1M
Spatial Organization of the Mitochondrial Inner MembraneR35GM137894 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI Jonathan R. Friedman · 2020 to 2026
$3.1M
A comparative approach for decomposing the mammalian brain architectural complexityDP2MH119423 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TOMER, RAJU · 2018 to 2018
$2.4M
Omni Oblique Plane Microscope to spread light-sheet based imaging in biomedical researchR01EB035538 · NIBIB · UT SOUTHWESTERN MEDICAL CENTER · PI Reto Paul Fiolka · 2024 to 2026
$1.0M
NCI NIH HHS U54 CA268072NIBIB NIH HHS R01 EB035538NIGMS NIH HHS R35 GM119768NIGMS NIH HHS R35 GM133522NIGMS NIH HHS R35 GM137894NIGMS NIH HHS RM1 GM145399NIMH NIH HHS DP2 MH119423
6 · The paper itself

Abstract

Light-Sheet Fluorescence Microscopy (LSFM) enables gentle, rapid, and efficient volumetric imaging of biological specimens. Despite its potential, LSFM has fragmented into multiple variants, each narrowly optimized for specific samples or imaging regimes, limiting its broad applicability. To overcome this barrier, we introduce the multi-immersion oblique plane microscope (miOPM), an adaptable LSFM platform for high-resolution imaging ranging from subcellular dynamics to whole organisms and cleared tissues. miOPM uniquely supports seamless interchangeability of oil, water, and air objectives, and maintains diffraction limited performance across a refractive index range of 1.33 - 1.51. It is compatible with standard sample mounting, current clearing protocols and high-throughput 3D imaging. We leverage miOPM to image diverse biological specimens at multiple spatial scales. By greatly expanding the adaptability and ease of use of LSFM, miOPM is poised to democratize advanced three-dimensional imaging.

Identifiers

PMID41279040
PMCPMC12632540

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.