Evidence map›Paper›PMID 41278888›Full record

ArticlebioRxiv : the preprint server for biology2025

Spatial analysis reveals the cellular microenvironments and mechanisms of inflammation and kidney injury in acute interstitial nephritis.

Megan L Baker, Vijayakumar R Kakade, Tifanny Budiman, Marlene Weiß, Joseph M Cunningham, Sagar Sadarangani, Gabriel Lerner, Gilbert Moeckel, Avi Z Rosenberg, Chirag R Parikh and 3 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Vijayakumar R Kakade
Tifanny Budiman
Marlene Weiß
Joseph M Cunningham
Sagar Sadarangani
Gabriel Lerner
Gilbert Moeckel
Avi Z Rosenberg
Dennis G MoledinaORCID 0000-0002-9537-9038

Funding

Yale Diabetes Research CenterP30DK045735 · NIDDK · YALE UNIVERSITY · PI GERALD I SHULMAN · 1993 to 2026
$44.0M
Yale SPORE in Skin CancerP50CA121974 · NCI · YALE UNIVERSITY · PI MARCUS W BOSENBERG, Harriet M. Kluger · 2006 to 2026
$43.9M
PATHOPHYSIOLOGY OF ACUTE AND CHRONIC RENAL DISEASET32DK007276 · NIDDK · YALE UNIVERSITY · PI ARONSON, PETER S., CANTLEY, LLOYD G · 1986 to 2022
$9.3M
Yale TMC for Cellular Senescence in Lymphoid OrgansU54AG076043 · NIA · YALE UNIVERSITY · PI FAN, RONG, HALENE, STEPHANIE · 2021 to 2025
$7.0M
Yale Murine-TMC on Immune Cell Senescence Derived InflammationU54AG079759 · NIA · YALE UNIVERSITY · PI DIXIT, VISHWA DEEP, MONTGOMERY, RUTH R · 2022 to 2025
$6.5M
Resource Development CoreU54DK137331 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI JOSEF CORESH · 2023 to 2026
$4.3M
Biomarkers for acute interstitial nephritis in humansR01DK128087 · NIDDK · YALE UNIVERSITY · PI MOLEDINA, DENNIS G. · 2021 to 2025
$2.9M
Defining the Pathogenesis and Prognosis of Human Acute Interstitial NephritisR01DK126815 · NIDDK · YALE UNIVERSITY · PI CANTLEY, LLOYD G · 2020 to 2024
$2.6M
Spatial Elucidation of Human Acute Kidney Injury and Chronic Kidney Disease using Imaging Mass CytometryU01DK133768 · NIDDK · YALE UNIVERSITY · PI LLOYD G CANTLEY, Vijayakumar Raghurama Rao Kakade · 2022 to 2026
$1.7M
Y-SCORCH 2.0: Further Data Mining and Functional Characterization for Single Cell Opioid Responses in the Context of HIV (SCORCH) ProgramR01DA063148 · NIDA · YALE UNIVERSITY · PI Mark Bender Gerstein, Yuval Kluger · 2025 to 2026
$1.1M
NCI NIH HHS P50 CA121974NIA NIH HHS U54 AG076043NIA NIH HHS U54 AG079759NIDA NIH HHS R01 DA063148NIDDK NIH HHS P30 DK045735NIDDK NIH HHS R01 DK126815NIDDK NIH HHS R01 DK128087NIDDK NIH HHS T32 DK007276NIDDK NIH HHS U01 DK133768NIDDK NIH HHS U54 DK137331
6 · The paper itself

Abstract

Acute interstitial nephritis (AIN) causes 15-20% of all acute kidney injury cases but lacks effective therapies beyond corticosteroids. Using high-resolution imaging mass cytometry and single-cell spatial transcriptomics to analyze human kidney biopsies with AIN, non-immunologic acute tubular injury (ATI), and reference tissue, the CXCL9-CXCR3 axis was identified as the defining immunologic signature of AIN, with 44-fold higher predicted CXCL9-CXCR3 interactions than ATI, creating homotypic inflammatory T cell amplification networks concentrated in lymphoid aggregates.

Identifiers

PMID41278888
PMCPMC12636469

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.