Evidence map›Paper›PMID 41278818›Full record

ArticlebioRxiv : the preprint server for biology2025

Community coalescence reveals strong selection and coexistence within species in complex microbial communities.

Sophie Jean Walton, Qing Xu, Richa Sharma, Hannah R Gellert, Chih-Fu Yeh, Jonas Cremer, Katherine S Xue, Dmitri A Petrov, Benjamin H Good

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sophie Jean WaltonBiophysics Program, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0003-1320-1525
Qing XuDepartment of Applied Physics, Stanford University, Stanford, CA 94305, USA.
Richa SharmaDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Hannah R GellertDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Chih-Fu YehDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Jonas CremerDepartment of Biology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0003-2328-5152
Katherine S XueDepartment of Molecular Biology and Biochemistry, University of California, Irvine, Irvine CA 92697, USA.ORCID 0000-0002-4094-3615
Dmitri A PetrovDepartment of Biology, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-3664-9130
Benjamin H GoodDepartment of Applied Physics, Stanford University, Stanford, CA 94305, USA.ORCID 0000-0002-7757-3347

Funding

Genomics of rapid adaptation in the lab and in the wildR35GM118165 · NIGMS · STANFORD UNIVERSITY · PI Dmitri Petrov · 2016 to 2026
$8.3M
Cellular and Molecular Biology Training ProgramT32GM154663 · NIGMS · STANFORD UNIVERSITY · PI Ashby J. Morrison · 2025 to 2026
$3.2M
Quantitative approaches for mapping the real-time evolution of the gut microbiotaR35GM146949 · NIGMS · STANFORD UNIVERSITY · PI Benjamin H Good · 2022 to 2026
$2.0M
Mechanisms of cell-size control in Gram-negative bacteriaR01GM149611 · NIGMS · STANFORD UNIVERSITY · PI Jonas B Cremer · 2024 to 2026
$926k
Household transmission of the human gut microbiota after antibiotic exposureR21AI168860 · NIAID · STANFORD UNIVERSITY · PI RELMAN, DAVID A. · 2023 to 2024
$426k
NIAID NIH HHS R21 AI168860NIGMS NIH HHS R01 GM149611NIGMS NIH HHS R35 GM118165NIGMS NIH HHS R35 GM146949NIGMS NIH HHS T32 GM154663
6 · The paper itself

Abstract

Complex microbial ecosystems harbor extensive intra-species diversity, but the fitness consequences of this genetic variation are poorly understood in community settings. Here we address this question by competing

Identifiers

PMID41278818
PMCPMC12637602

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.