Evidence map›Paper›PMID 41278783›Full record

ArticlebioRxiv : the preprint server for biology2025

A correlative quantitative phase contrast and fluorescence super-resolution microscope for imaging molecules in their cellular context.

Yujin Bao, Zach Marin, Xiongchao Chen, Qiong Liu, Yazgan Tuna, Sylvi Stoller, Florian Schueder, Chuyue Zhang, Suet Yin Sarah Fung, Min Wu and 6 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yujin BaoDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-0536-8504
Zach MarinDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0001-5341-9911
Xiongchao ChenDepartment of Biomedical Engineering, Yale University, New Haven, CT, USA.ORCID 0000-0003-4112-8492
Qiong LiuDepartment of Biomedical Engineering, Yale University, New Haven, CT, USA.ORCID 0009-0003-9420-8549
Yazgan TunaDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.ORCID 0000-0003-4499-4396
Sylvi StollerDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID 0009-0009-0709-2167
Florian SchuederDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-3412-5066
Chuyue ZhangDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.ORCID 0000-0002-4153-555X
Suet Yin Sarah FungDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-9448-2826
Min WuDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-9161-7940
Karla M NeugebauerDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-3835-6761
Jonathon HowardDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.ORCID 0000-0003-0086-1196
Chi LiuDepartment of Biomedical Engineering, Yale University, New Haven, CT, USA.ORCID 0000-0002-7007-1037
David BaddeleyAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand.ORCID 0000-0002-8134-1987
Michael ShribakMarine Biological Laboratory, Woods Hole, MA, USA.ORCID 0000-0002-5849-6294
Joerg BewersdorfDepartment of Cell Biology, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-4085-7020

Funding

Orientation Independent DIC and Polarization MicroscopyR01GM101701 · NIGMS · MARINE BIOLOGICAL LABORATORY · PI SHRIBAK, MICHAEL · 2012 to 2020
$3.8M
Development of advanced cardiac SPECT imaging technologiesR01HL154345 · NHLBI · YALE UNIVERSITY · PI LIU, CHI, SINUSAS, ALBERT J · 2020 to 2023
$3.2M
Development of a Versatile Multiplexing Nanoscopy Platform for Cell BiologyR01GM151829 · NIGMS · YALE UNIVERSITY · PI Joerg Bewersdorf · 2023 to 2026
$2.3M
DMA-Tudor interaction modules: a novel approach to Survival Motor Neuron protein (SMN) and Cajal body functionR01NS128358 · NINDS · YALE UNIVERSITY · PI Karla M Neugebauer · 2022 to 2026
$2.2M
Endocytic dynamics and surface emergent property of leukocyte IntegrinsR01GM151344 · NIGMS · YALE UNIVERSITY · PI Min Wu · 2023 to 2026
$1.9M
NHLBI NIH HHS R01 HL154345NIGMS NIH HHS R01 GM101701NIGMS NIH HHS R01 GM151344NIGMS NIH HHS R01 GM151829NINDS NIH HHS R01 NS128358
6 · The paper itself

Abstract

Fluorescence microscopy has been widely used to reveal the spatial distribution of specifically labeled molecules, but it is blind to cellular context. Quantitative phase contrast microscopy (QPC) provides such complementary information. Here we have developed a platform that combines the QPC technique of correlative orientation-independent differential interference contrast (OI-DIC) microscopy with single-molecule super-resolution fluorescence microscopy. We demonstrate a detection sensitivity of 0.05 nm optical path difference, sufficient to detect single microtubules, and show its capability of 3D super-resolution fluorescence imaging in the cellular context. Additionally, we report deep-learning enabled digital staining, identifying nuclei, mitochondria and lipid droplets from OI-DIC data and demonstrate the potential of this approach for long-term live-cell imaging of organelles of interest without the need for fluorescence. OI-DIC can be easily integrated into most fluorescence microscopes and is readily adoptable by microscopy labs.

Identifiers

PMID41278783
PMCPMC12632949

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.