Evidence map›Paper›PMID 41277040›Full record

ArticlePlant communications2026

PeanutOmics: A comprehensive platform with an integrative multi-omics atlas for peanut research.

Hongzhang Xue, Kunkun Zhao, Xiaorui Dong, Qian Ma, SaSa Hu, Zenghui Cao, Yang Shu, Yanzhe Li, Xiaoxiang Huang, Kai Zhao and 8 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Plant communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Hongzhang XueCollege of Agronomy, Henan Agricultural University, Zhengzhou, China; School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Kunkun ZhaoCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
Xiaorui DongSchool of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Qian MaCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
SaSa HuCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
Zenghui CaoCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
Yang ShuSchool of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Yanzhe LiCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
Xiaoxiang HuangSchool of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Kai ZhaoCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
Ding QiuCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
Wenguang ShaoSchool of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.
Rui RenCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
Zhongfeng LiCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
Fangping GongCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
Xingli MaCollege of Agronomy, Henan Agricultural University, Zhengzhou, China.
Chaochun WeiSchool of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China. Electronic address: ccwei@sjtu.edu.cn.
Dongmei YinCollege of Agronomy, Henan Agricultural University, Zhengzhou, China. Electronic address: yindm@henau.edu.cn.

Funding

Non-US Government Research Support type
6 · The paper itself

Abstract

Peanut (Arachis hypogaea) is an economically important legume crop, but a comprehensive understanding of its gene expression dynamics across developmental stages remains limited. To address this gap, we constructed an integrative multi-omics atlas spanning transcriptomic, proteomic, and metabolomic profiles across 22 primary vegetative and reproductive tissues. We identified 53 030 expressed genes at the transcript level, 12 826 with protein evidence, and 2035 metabolites. Among these, 2147 genes encode novel proteins, and 274 produce microproteins. Functional analyses identified WDR13, TANGO, RPP13, DEF3, SLR1-BP, and SLE2 as key genes involved in development and stress responses. Co-expression analysis grouped genes into 24 modules, many of which exhibited tissue-specific expression patterns. Pathway enrichment and correlation network analyses further highlighted the critical roles of the IAA and ARF gene families in hormone signaling and cell growth, particularly in peg development. To facilitate data accessibility and downstream research, we developed PeanutOmics (https://cgm.sjtu.edu.cn/PeanutOmics), a user-friendly web platform that integrates multi-omics datasets with advanced analytical tools. This atlas offers a valuable resource for understanding gene and metabolite regulation in peanut and lays the groundwork for advanced molecular breeding to improve crop productivity.

Indexed as

ArachisTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantMetabolomicsMultiomicsPlant ProteinsProteomicsPlant Proteinsdatabasemetabolomicsmulti-omicspeanutproteomicstranscriptomics

Identifiers

PMID41277040
PMCPMC12902285

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.