Evidence map›Paper›PMID 41276550›Full record

ArticleScientific reports2025

Functional characterization of grammicin biosynthesis genes in Xylaria grammica and strategies for enhanced metabolite production.

Sunmin An, Miju Jo, Yerim Lee, Youngmin Kim, Min-Hye Jeong, Jongbum Jeon, Soonok Kim, Won-Jae Chi, Sook-Young Park

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sunmin An *Department of Plant Medicine, Sunchon National University, Suncheon, Korea.
Miju Jo *Department of Plant Medicine, Sunchon National University, Suncheon, Korea.
Yerim LeeDepartment of Plant Medicine, Sunchon National University, Suncheon, Korea.
Youngmin KimDepartment of Plant Medicine, Sunchon National University, Suncheon, Korea.
Min-Hye JeongDepartment of Plant Medicine, Sunchon National University, Suncheon, Korea.
Jongbum JeonKorea Bioinformation Center (KOBIC), Korea Research Institute of Bioscience & Biotechnology, Daejeon, Korea.
Soonok KimStrategic Planning Department, National Institute of Biological Resources, Incheon, Korea. sokim90@korea.kr.
Won-Jae ChiSpecies Diversity Research Division, Biodiversity Research Department, National Institute of Biological Resources, Incheon, Korea. wjchi76@korea.kr.
Sook-Young ParkDepartment of Plant Medicine, Sunchon National University, Suncheon, Korea. spark@scnu.ac.kr.

Funding

Ministry of Environment (MOE) of the Republic of Korea NIBR202502104
6 · The paper itself

Abstract

Fungi produce diverse secondary metabolites with agricultural and medical potential. Xylaria grammica EL000614 synthesizes grammicin, an isomer of patulin, which shows nematicidal activity against root-knot nematodes with low cytotoxicity. However, the genetic basis of grammicin biosynthesis remains unclear. Here, we characterized two genes, xgpatK and xgpatL, encoding a 6-methylsalicylic acid synthase XgPatK and a Zn(II)2Cys6 transcription factor XgPatL, respectively, within a putative grammicin biosynthetic cluster. Comparative genomic analysis identified 11 cluster genes in X. grammica that are also conserved in patulin-producing fungi, including Aspergillus clavatus and Penicillium expansum. Deletion of xgpatK or xgpatL abolished grammicin production, while complementation restored it, confirming their essential roles. Furthermore, constitutive overexpression of xgpatL increased grammicin production three-fold compared with the wild-type. These findings provide the first genetic and functional evidence of grammicin biosynthesis in X. grammica and demonstrate the regulatory role of XgPatL. Our study advances the understanding of fungal secondary metabolism and highlights grammicin as a potential agent for sustainable biological control of plant-parasitic nematodes.

Indexed as

XylarialesBiosynthetic PathwaysFungal ProteinsGene Expression Regulation, FungalMultigene FamilySecondary MetabolismFungal ProteinsGene-functional analysisGrammicinGrammicin overexpressionSecondary metabolismXylaria grammica

Identifiers

PMID41276550
PMCPMC12749516

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.