Evidence map›Paper›PMID 41273271›Full record

ArticleJournal of chemical theory and computation2025

Nonequilibrium Acceleration and Time Forecasting of Cluster-Mediated Self-Assembly.

Roy Furman, Michael Faran, Gili Bisker

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Roy FurmanSchool of Electrical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv 69978, Israel.
Michael FaranSchool of Biomedical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv 69978, Israel.ORCID 0009-0001-7545-1477
Gili BiskerSchool of Biomedical Engineering, Faculty of Engineering, Tel Aviv University, Tel Aviv 69978, Israel.ORCID 0000-0003-2592-7956

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nonequilibrium driving accelerates self-assembly by breaking the trade-off between thermodynamic stability and kinetic accessibility. While this principle has inspired a variety of theoretical and computational approaches, its effectiveness and predictability within physically realistic simulation frameworks remain to be systematically explored. Here, we investigate its impact using the Virtual-Move Monte Carlo (VMMC) method, a widely adopted approach for simulating collective particle dynamics during self-assembly. We investigate when such acceleration is both effective and predictable for three models, namely, VMMC with directed specific interactions, VMMC with undirected specific interactions, and an undirected single-particle Monte Carlo (SPMC), serving as a benchmark. Across all cases, nonequilibrium driving significantly reduces the time to first assembly, underscoring its robustness as a strategy for improving assembly efficiency. We further assess the Stochastic Landscape Method (SLM) as a forecasting tool for these models, and find its predictive power depends strongly on the nature of the interactions. Specifically, while SPMC and VMMC with undirected interaction show similar predictability, VMMC systems with directed interactions are more predictive than undirected dynamics. Analysis of simulation energy trajectories reveals the physical basis of these differences and delineates the conditions under which predictive tools like SLM are most effective. Our results highlight nonequilibrium driving as a powerful strategy for improving complex self-assembly outcomes and identify directed binding as a key principle for enhancing predictability.

Identifiers

PMID41273271
PMCPMC12874364

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.