Evidence map›Paper›PMID 41271766›Full record

ArticleScientific data2025

Comparative transcriptomic profiling of field-grown cassava genotypes across season transitions.

Mariam Webber-Birungi, Joseph Enye Iboyi, Erik Alexandersson, Andreas Gisel, Livia Stavolone

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mariam Webber-BirungiInternational Institute of Tropical Agriculture (IITA), Ibadan, Nigeria.
Joseph Enye IboyiInternational Institute of Tropical Agriculture (IITA), Ibadan, Nigeria.
Erik AlexanderssonDepartment of Plant Breeding, Swedish University of Agricultural Sciences (SLU), Sundsvägen 10, SE-234 22, Lomma, Sweden.
Andreas GiselInternational Institute of Tropical Agriculture (IITA), Ibadan, Nigeria. andreas.gisel@cnr.it.
Livia StavoloneInternational Institute of Tropical Agriculture (IITA), Ibadan, Nigeria. livia.stavolone@cnr.it.ORCID 0000-0002-0691-1302

Funding

Gates Foundation INV-008053
6 · The paper itself

Abstract

Cassava (Manihot esculenta, Crantz) is a perennial crop cultivated in tropical and subtropical areas. In its cultivation cycle, it encounters environmental stresses related to changes in temperature and water fluctuations during seasonal transitions. We profiled the transcriptomes of four field-grown genotypes to investigate the molecular basis of adaptation to season transitions. 3'mRNA-seq libraries were prepared from samples collected from storage roots to capture gene expression changes associated with shifts from rainy to dry and dry to rainy seasons. Reproducibility and variability within the dataset were evaluated using correlation analysis and principal component analysis, providing confidence in data quality and consistency across samples. The usability of these data was proved by differential expression analysis during the rainy-to-dry and dry-to-rainy transitions, and by functional enrichment analysis. The detailed information of the experimental environmental conditions and of the workflow from planting to final DEGs analysis provided, make this dataset a useful resource for future research on plant responses to environmental fluctuations and to identify candidate genes for crop improvement strategies for climate-resilient varieties.

Indexed as

ManihotTranscriptomeGene Expression ProfilingGenotypeSeasons

Identifiers

PMID41271766
PMCPMC12639095

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.