Evidence map›Paper›PMID 41271707›Full record

ArticleNature communications2025

Mapping of HOCl-oxidized RNA identifies abasic sites as major damage and oxidation product of oxo

Marlies Weber, Kasturi Raorane, Clara Johanna Grampp, Valérie Bourguignon, Lea-Marie Kilz, David Glänzer, Virginie Marchand, Christoph Kreutz, Yuri Motorin, Mark Helm

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Marlies Weber *Johannes Gutenberg-University Mainz, Institute of Pharmacy and Biomedical Sciences, Staudingerweg, Mainz, Germany.
Kasturi Raorane *Université de Lorraine CNRS, IMoPA UMR7365, Nancy, France.
Clara Johanna GramppJohannes Gutenberg-University Mainz, Institute of Pharmacy and Biomedical Sciences, Staudingerweg, Mainz, Germany.
Valérie BourguignonUniversité de Lorraine CNRS, IMoPA UMR7365, Nancy, France.
Lea-Marie KilzJohannes Gutenberg-University Mainz, Institute of Pharmacy and Biomedical Sciences, Staudingerweg, Mainz, Germany.
David GlänzerInstitute of Organic Chemistry and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innrain 80/82 6020, Innsbruck, Austria.
Virginie MarchandUniversité de Lorraine CNRS, INSERM, UAR2008 IBSLor Epitranscriptomics and RNA Sequencing Core Facility, Nancy, France.ORCID http://orcid.org/0000-0002-8537-1139
Christoph KreutzInstitute of Organic Chemistry and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck, Innrain 80/82 6020, Innsbruck, Austria.ORCID http://orcid.org/0000-0002-7018-9326
Yuri MotorinUniversité de Lorraine CNRS, IMoPA UMR7365, Nancy, France. yuri.motorin@univ-lorraine.fr.ORCID http://orcid.org/0000-0002-8018-334X
Mark HelmJohannes Gutenberg-University Mainz, Institute of Pharmacy and Biomedical Sciences, Staudingerweg, Mainz, Germany. mhelm@uni-mainz.de.ORCID http://orcid.org/0000-0002-0154-0928

Funding

Agence Nationale de la Recherche (French National Research Agency) "OxiXlink" PRC ANR-23-CE44-0025Agence Nationale de la Recherche (French National Research Agency) OxiXlink" PRC ANR-23-CE44-0025Deutsche Forschungsgemeinschaft (German Research Foundation) TRR 319 TP C01/C03 439669440
6 · The paper itself

Abstract

RNA oxidation is an important yet understudied process, partly because methods to localize oxidized residues in RNA are lacking. We introduce OAbSeq, a deep-sequencing approach that maps oxidized sites with high sensitivity by exploiting aniline-induced strand scission at noncanonical nucleosides to generate unique ligation-competent fragments utilized for library preparation. Applied to yeast RNA, OAbSeq detects widespread signals predominating at purines, especially at guanosines. Exogenous oxidation increased signal intensity but preserved the guanosine-dominated pattern. Parallel quantification of 8-oxoguanosine (oxo

Indexed as

GuanosineHypochlorous AcidRNARNA, FungalHigh-Throughput Nucleotide SequencingOxidation-ReductionSaccharomyces cerevisiae8-hydroxyguanosineGuanosineHypochlorous AcidRNARNA, Fungal

Identifiers

PMID41271707
PMCPMC12639000

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.