Evidence map›Paper›PMID 41271695›Full record

ArticleNature communications2025

Germline pathogenic variation impacts somatic alterations and patient outcomes in pediatric central nervous system tumors.

Ryan J Corbett, Rebecca S Kaufman, Shelly W McQuaid, Zalman Vaksman, Saksham Phul, Miguel A Brown, Jennifer L Mason, Sebastian M Waszak, Bo Zhang, Chuwei Zhong and 23 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors.

Ryan J Corbett *Center for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Rebecca S Kaufman *Center for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-8535-9730
Shelly W McQuaidAnn & Robert H. Lurie Children's Hospital of Chicago, Chicago, IL, USA.
Zalman VaksmanCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Saksham PhulCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-2771-2572
Miguel A BrownCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Jennifer L MasonCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Sebastian M WaszakLaboratory of Computational Neuro-Oncology, Swiss Institute for Experimental Cancer Research, School of Life Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Bo ZhangCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Chuwei ZhongCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Emily BlauelCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Heena DesaiDivision of Hematology/Oncology, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ryan HauslerDivision of Hematology/Oncology, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ammar S NaqviCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-0625-666X
Jessica M DaggettCenter for Cancer and Immunology Research, Children's National Hospital, Washington, DC, USA.ORCID http://orcid.org/0000-0002-9404-7939
Alex SicklerCenter for Cancer and Immunology Research, Children's National Hospital, Washington, DC, USA.
Evan C Cresswell-ClayCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Patricia J SullivanCenter for Cancer and Immunology Research, Children's National Hospital, Washington, DC, USA.
Antonia ChroniCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Zhuangzhuang GengCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Elizabeth M GonzalezCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-6424-1522
Yuankun ZhuCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Allison P HeathCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Marilyn LiDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Phillip B StormCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Adam C ResnickCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Kara N MaxwellDivision of Hematology/Oncology, Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0001-8192-4202
Kristina A ColeCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Angela J WaandersAnn & Robert H. Lurie Children's Hospital of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-0571-2889
Miriam BornhorstAnn & Robert H. Lurie Children's Hospital of Chicago, Chicago, IL, USA.
Suzanne P MacFarlandCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Jo Lynne RokitaCenter for Data-Driven Discovery in Biomedicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA. jrokita@childrensnational.org.ORCID http://orcid.org/0000-0003-2171-3627
Sharon J DiskinCenter for Childhood Cancer Research, Children's Hospital of Philadelphia, Philadelphia, PA, USA. diskin@chop.edu.ORCID http://orcid.org/0000-0002-7200-8939

Funding

U24-Uncovering the Shared Genetic Origins of Childhood Cancer and Structural Birth Defects Through Enhanced Data Integration and Analysis with the CFDE Data Distillery Knowledge Graph.U24OD038422 · OD · CHILDREN'S HOSP OF PHILADELPHIA · PI DISKIN, SHARON, GOLDMUNTZ, ELIZABETH · 2024 to 2025
$4.4M
Postdoctoral Training Program in Genomic MedicineT32HG009495 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI Katherine L. Nathanson, Bogdan Pasaniuc · 2017 to 2026
$4.2M
Identification and characterization of genetic risk factors in pediatric brain tumorsR03CA287169 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI DISKIN, SHARON, ROKITA, JO LYNNE · 2024 to 2025
$356k
Discovery of neoepitope immunotherapeutic targets in diffuse pediatric high-grade gliomasR03OD036498 · OD · CHILDREN'S HOSP OF PHILADELPHIA · PI ROKITA, JO LYNNE · 2023 to 2023
$356k
Discovering the genetic basis of neuroblastoma initiation and progressionR03CA230366 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI DISKIN, SHARON · 2018 to 2019
$344k
NCI NIH HHS R03 CA230366NCI NIH HHS R03 CA287169NHGRI NIH HHS T32 HG009495NIH HHS R03 OD036498NIH HHS U24 OD038422U.S. Department of Health and Human Services (U.S. Department of Health & Human Services) U24OD038422U.S. Department of Health & Human Services | National Institutes of Health (NIH) R03CA230366U.S. Department of Health & Human Services | National Institutes of Health (NIH) R03OD036498
6 · The paper itself

Abstract

The contribution of rare pathogenic/likely pathogenic (P/LP) germline variants to pediatric central nervous system (CNS) tumor development remains understudied. Here, we characterize the prevalence and biological significance of germline P/LP variants in cancer predisposition genes across 830 CNS tumor patients from the Pediatric Brain Tumor Atlas (PBTA). We identify germline P/LP variants in 23.3% (193/830) of patients and the majority (137/193) lack clinical reporting of genetic tumor syndromes. Among P/LP carriers, 34.6% have putative somatic second hits or loss of function tumor alterations. Finally, we link pathogenic germline variation with somatic events and patient survival to highlight the impact of germline variation on tumorigenesis and patient outcomes.

Indexed as

Central Nervous System NeoplasmsGerm-Line MutationAdolescentChildChild, PreschoolFemaleGenetic Predisposition to DiseaseHumansInfantMale

Identifiers

PMID41271695
PMCPMC12638842

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.