Evidence map›Paper›PMID 41267209›Full record

ArticleAutophagy2026

Regulation of pexophagy by a novel TBK1-MARCHF7-PXMP4-NBR1 axis in PEX1-depleted HeLa cells.

Yong Hwan Kim, Joon Bum Kim, Ji-Eun Bae, Na Yeon Park, Seong Hyun Kim, Jae-Young Um, Dong-Seok Lee, Kyu Sun Lee, Peter K Kim, Doo Sin Jo and 1 more

Abstract read
In one paragraph

Article in Autophagy, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Parallel Selection for Longevity in Mammals and Birds.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yong Hwan KimSchool of Life Sciences, BK21 FOUR KNU Creative BioResearch Group, Kyungpook National University, Daegu, Republic of Korea.ORCID 0000-0002-0238-8198
Joon Bum KimOrganelle Institute, Kyungpook National University, Daegu, Republic of Korea.
Ji-Eun BaeOrganelle Institute, Kyungpook National University, Daegu, Republic of Korea.
Na Yeon ParkOrganelle Institute, Kyungpook National University, Daegu, Republic of Korea.ORCID 0009-0004-3552-0062
Seong Hyun KimSchool of Life Sciences, BK21 FOUR KNU Creative BioResearch Group, Kyungpook National University, Daegu, Republic of Korea.
Jae-Young UmDepartment of Science in Korean Medicine, Graduate School, Kyung Hee University, Seoul, Republic of Korea.
Dong-Seok LeeSchool of Life Sciences, BK21 FOUR KNU Creative BioResearch Group, Kyungpook National University, Daegu, Republic of Korea.
Kyu Sun LeeMetabolism and Neurophysiology Research Group, KRIBB, Daejeon, Republic of Korea.
Peter K KimDepartment of Biochemistry, University of Toronto, Toronto, ON, Canada.
Doo Sin JoORGASIS Corp., Suwon, Republic of Korea.
Dong-Hyung ChoSchool of Life Sciences, BK21 FOUR KNU Creative BioResearch Group, Kyungpook National University, Daegu, Republic of Korea.ORCID 0000-0002-8859-0310

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peroxisomes are essential for lipid metabolism and redox balance, with pexophagy playing a critical role in maintaining cellular homeostasis. However, the regulatory mechanisms of pexophagy remain unclear. Through functional screening, we identified MARCHF7 as a novel E3 ligase regulating pexophagy. MARCHF7 depletion impaired pexophagic flux under PEX1 knockdown conditions. MARCHF7 binds to PXMP4 and promotes its ubiquitination at lysine 20 in PEX1-deficient cells. Depletion of PXMP4 impairs pexophagy, and reconstitution with the PXMP4 lysine 20 ubiquitination-defective mutant failed to rescue pexophagy. PEX1 depletion also induces TBK1 phosphorylation at serine 172, activating TBK1, which subsequently phosphorylates MARCHF7. This activation is driven by ROS accumulation, which reduces PXMP4 ubiquitination and prevents peroxisome loss. Furthermore, downregulation of MARCHF7 or PXMP4 impairs NBR1 recruitment to peroxisomes, suggesting that ubiquitinated PXMP4 acts as a recognition signal for NBR1. Collectively, our findings establish the TBK1-MARCHF7-PXMP4-NBR1 axis as a key regulatory pathway for pexophagy in response to PEX1 depletion.

Indexed as

AutophagyMembrane ProteinsPeroxisomesProtein Serine-Threonine KinasesUbiquitin-Protein LigasesHeLa CellsHumansMacroautophagyPhosphorylationReactive Oxygen SpeciesSignal TransductionUbiquitinationMembrane ProteinsProtein Serine-Threonine KinasesReactive Oxygen SpeciesTBK1 protein, humanUbiquitin-Protein LigasesMARCHF7peroxisomePEX1pexophagyPXMP4TBK1

Identifiers

PMID41267209
PMCPMC12834161

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.