Evidence map›Paper›PMID 41266388›Full record

ArticleScientific data2025

Chromosome-level genome assembly and annotation of the endangered species Ormosia henryi.

Lei Duan, Zengqiang Xia, Yuwen Ji, Lina Han, Sawai Mattapha, Ying Wang, Yongqing Li, Nikolai Alexandrovich Kruglikov, Jin Hu, Faguo Wang and 1 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lei Duan *Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China/State Key Laboratory of Plant Diversity and Specialty crops/Guangdong Provincial Key Laboratory of Applied Botany/Guangdong Provincial Key Laboratory of Digital Botanical Garden, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.ORCID 0000-0001-6152-5458
Zengqiang Xia *Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China/State Key Laboratory of Plant Diversity and Specialty crops/Guangdong Provincial Key Laboratory of Applied Botany/Guangdong Provincial Key Laboratory of Digital Botanical Garden, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.ORCID 0000-0002-0014-1466
Yuwen Ji *Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China/State Key Laboratory of Plant Diversity and Specialty crops/Guangdong Provincial Key Laboratory of Applied Botany/Guangdong Provincial Key Laboratory of Digital Botanical Garden, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
Lina HanGuangdong Liangtian Agriculture & Forestry Technology Co., Ltd., Qingyuan, 511899, China.
Sawai MattaphaDepartment of Biology, Faculty of Science, Udon Thani Rajabhat University, Udon Thani, 4001, Thailand.
Ying WangKey Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China/State Key Laboratory of Plant Diversity and Specialty crops/Guangdong Provincial Key Laboratory of Applied Botany/Guangdong Provincial Key Laboratory of Digital Botanical Garden, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
Yongqing LiKey Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China/State Key Laboratory of Plant Diversity and Specialty crops/Guangdong Provincial Key Laboratory of Applied Botany/Guangdong Provincial Key Laboratory of Digital Botanical Garden, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
Nikolai Alexandrovich KruglikovMikheev Institute of Metal Physics, Ural Branch, Russian Academy of Sciences, Yekaterinburg, 620108, Russia.
Jin HuGuangdong Eco-Engineering Polytechnic, Guangzhou, 510520, China. hujin0204@163.com.
Faguo WangKey Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China/State Key Laboratory of Plant Diversity and Specialty crops/Guangdong Provincial Key Laboratory of Applied Botany/Guangdong Provincial Key Laboratory of Digital Botanical Garden, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China. wangfg@scib.ac.cn.
Hongfeng ChenKey Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China/State Key Laboratory of Plant Diversity and Specialty crops/Guangdong Provincial Key Laboratory of Applied Botany/Guangdong Provincial Key Laboratory of Digital Botanical Garden, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China. h.f.chen@scbg.ac.cn.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32070229, 32470221
6 · The paper itself

Abstract

Ormosia henryi of the legume family distributes in southern China, Vietnam and Thailand. This species is well-known as a rare and endangered plant, as well as a remarkable ornamental and timber tree. In this study, we present the first high-quality chromosome-level assembly of O. henryi based on HiFi and Hi-C data. The sequencing data were then assembled onto eight pseudo-chromosomes. The total length of genome assembly is 3.065 Gb, with a contig N50 of 110.65 Mb. We annotate 90,019 protein-coding genes in O. henryi genome, and the BUSCO evaluation exhibits a high score of 95.5%. The phylogenetic analysis displays a monophyletic genus Ormosia within the Leguminosae family, and O. henryi positions in an infrageneric clade of the Old World I. In summary, the high-quality genome sequences of O. henryi will facilitate exploration of the economic value of the species and the wild resources conservation, such as molecular breeding and improvement of disease resistance, will also promote future genomic comparative studies across more species within the amphi-Pacific distributed genus Ormosia.

Indexed as

Chromosomes, PlantEndangered SpeciesFabaceaeGenome, PlantMolecular Sequence AnnotationPhylogeny

Identifiers

PMID41266388
PMCPMC12635401

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.