Evidence map›Paper›PMID 41262076›Full record

ArticleBiomarker insights2025

Salivary Proteomics & Gene Expression Analysis: Applications in Orthodontics and Oral Health Care Research-A Pilot Project.

Vaibhav Gandhi, Po-Jung Chen, Sumit Yadav

Abstract read
In one paragraph

Article in Biomarker insights, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Vaibhav GandhiDepartment of Growth and Development, College of Dentistry, University of Nebraska Medical Center, Lincoln, NE, USA.ORCID https://orcid.org/0000-0002-2774-0207
Po-Jung ChenDepartment of Growth and Development, College of Dentistry, University of Nebraska Medical Center, Lincoln, NE, USA.ORCID https://orcid.org/0000-0002-8875-432X
Sumit YadavDepartment of Growth and Development, College of Dentistry, University of Nebraska Medical Center, Lincoln, NE, USA.ORCID https://orcid.org/0000-0002-2434-7995

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Advances in analytical techniques, including salivary proteomics and gene expression analysis, have enabled the identification of thousands of proteins and specific genetic markers, providing a comprehensive understanding of salivary composition and its dynamic changes in response to therapeutic interventions. Objectives: To conduct the salivary proteomic analyses using the LC-MS/MS method and identify the number of proteins in the whole saliva. This study also assessed the effect of an intraoral vibration device on the expression of specific genes associated with the bone remodeling process. Design: This pilot project is a prospective study where salivary samples were assessed at baseline (0 day), Midpoint (15 days), and Endpoint (30 days) following the intervention. Methods: This study utilized an intraoral vibration device as a therapeutic intervention to observe the changes in the salivary proteomic analyses using the LC-MS/MS method. Salivary gene expression analysis was conducted for ALPL, OPN, IL1B, IL1RN, IL1R1, TNF alpha, RANKL, and RUNX2 genes. Results: A total of 1119 proteins in 1059 clusters at 1 minimum peptide and a 444 proteins in 384 clusters at 2 minimum peptides were identified in saliva. Out of all of the genes included in this experiment, OPN showed significant upward change at mid point (9 fold) (15 days) followed by moving toward the baseline level (2.3-fold) toward the end point (30 days). Conclusion: This study highlights the potential of salivary proteomics and gene expression analysis as a promising tool for biomarker discovery, emphasizing the complexity and their variability. Despite of some challenges, the advantages of whole saliva collection and the sensitivity of shotgun proteomics and gene expression analysis support its potential as a high-throughput, practical approach for future applications in the field of oral health care.

Indexed as

gene expressionhuman salivamass spectrometrysalivary proteomicsultra-high performance liquid chromatography

Identifiers

PMID41262076
PMCPMC12623663

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.