Evidence map›Paper›PMID 41259558›Full record

ArticleJournal of applied oral science : revista FOB2025

Oral microbiome patterns of dental caries in Kazakhstani adolescents.

Argul Issilbayeva, Zharkyn Jarmukhanov, Samat Kozhakhmetov, Yermekbayeva Bakytgul, Laura Chulenbayeva, Graciela Muniz-Terrera, Masae Furukawa, Hiroki Nikawa, Adil Supiyev, Almagul Kushugulova and 1 more

Abstract read
In one paragraph

Article in Journal of applied oral science : revista FOB, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Argul IssilbayevaNazarbayev University, National Laboratory Astana, Center for Life Sciences, Astana, Kazakhstan.ORCID http://orcid.org/0000-0002-7350-6083
Zharkyn JarmukhanovNazarbayev University, National Laboratory Astana, Center for Life Sciences, Astana, Kazakhstan.ORCID http://orcid.org/0000-0002-1869-1087
Samat KozhakhmetovNazarbayev University, National Laboratory Astana, Center for Life Sciences, Astana, Kazakhstan.ORCID http://orcid.org/0000-0001-9668-0327
Yermekbayeva BakytgulNazarbayev University, National Laboratory Astana, Center for Life Sciences, Astana, Kazakhstan.ORCID http://orcid.org/0000-0003-1407-6332
Laura ChulenbayevaNazarbayev University, National Laboratory Astana, Center for Life Sciences, Astana, Kazakhstan.ORCID http://orcid.org/0000-0002-8691-9485
Graciela Muniz-TerreraOhio University, Heritage College of Osteopathic Medicine, Athens, Ohio, USA.ORCID http://orcid.org/0000-0002-4516-0337
Masae FurukawaNational Institutes of Health (NIH), Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD), Bethesda, MD, USA.ORCID http://orcid.org/0000-0001-5674-0671
Hiroki NikawaHiroshima University, Graduate School of Biomedical and Health Sciences, Hiroshima, Japan.ORCID http://orcid.org/0000-0002-4883-5723
Adil SupiyevOhio University, Heritage College of Osteopathic Medicine, Athens, Ohio, USA.ORCID http://orcid.org/0000-0001-7532-4665
Almagul KushugulovaNazarbayev University, National Laboratory Astana, Center for Life Sciences, Astana, Kazakhstan.ORCID http://orcid.org/0000-0001-9479-0899
Anara ZhumadilovaOhio University, Heritage College of Osteopathic Medicine, Athens, Ohio, USA.ORCID http://orcid.org/0000-0001-7514-9705

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveThe oral microbiome is one of the most complex microbial ecosystems in the host. This study aimed to investigate and characterize the oral microbiome composition in Kazakhstani adolescents associated with dental caries. METHODOLOGY: The study included 312 adolescents, with 241 individuals presenting with caries and 71 caries-free, aged 12-15 years. Dental caries assessment was performed using DMFT (Decayed, missed, filled teeth) index. Oral samples were collected, and 16S rRNA (16S ribosomal ribonucleic acid) gene sequencing targeting the V3-V4 hypervariable regions on an Illumina MiSeq platform was performed to profile the microbial communities. Functional metagenomic predictions were generated using PICRUSt2 v2.5.0, using the KEGG database for bacterial pathway abundance estimation. Data analysis was conducted using Python 3.9.16 and R 4.2.2.

resultsThe alpha diversity was insignificant, while beta diversity analysis demonstrated clear distinctions by Bray-Curtis (F=2.5, p=0.003) and weighted UniFrac distances (F=4.4, p=0.002). The Neisseria and Prevotella genera, and Gammaproteobacteria class showed significant associations with dental caries (MaAsLin2 p≤0.05, LDA≥2), stronger predictive power (AUC=0.65, F1=0.83), and higher predicted functional activity through glutathione metabolism, RNA degradation, and unsaturated fatty acid metabolism pathways.

conclusionsThis study identified specific oral microbiome patterns associated with dental caries in Kazakhstani adolescents, revealing interactions between key bacterial taxa and metabolic pathways.

Indexed as

Dental CariesMicrobiotaMouthAdolescentChildDMF IndexFemaleHumansMaleReference ValuesRNA, Ribosomal, 16SRNA, Ribosomal, 16S

Identifiers

PMID41259558
PMCPMC12672002

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.