Evidence map›Paper›PMID 41258319›Full record

ArticleNature communications2025

Non-visual photoreceptive brain specification in sea urchin larvae.

Junko Yaguchi, Koki Tsuyuzaki, Ikutaro Sawada, Atsushi Horiuchi, Naoaki Sakamoto, Takashi Yamamoto, Takahiro Yamashita, Shunsuke Yaguchi

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. TRPA1 Channels as Multimodal Environmental Sensors: Structure-Function Insights From Aquatic Organisms.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Junko Yaguchi *Shimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan.ORCID http://orcid.org/0000-0001-6118-8615
Koki Tsuyuzaki *Department of Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan. koki.tsuyuzaki@gmail.com.ORCID http://orcid.org/0000-0003-3797-2148
Ikutaro SawadaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwake, Kyoto, Japan.ORCID http://orcid.org/0009-0001-7324-0879
Atsushi HoriuchiDepartment of Biophysics, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwake, Kyoto, Japan.
Naoaki SakamotoGraduate School of Integrated Sciences for Life, Hiroshima University, Higashi-Hiroshima, Hiroshima, Japan.ORCID http://orcid.org/0000-0003-0546-4018
Takashi YamamotoGenome Editing Innovation Center, Hiroshima University, Higashi-Hiroshima, Hiroshima, Japan.ORCID http://orcid.org/0000-0002-6516-2903
Takahiro YamashitaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwake, Kyoto, Japan.ORCID http://orcid.org/0000-0002-7956-9288
Shunsuke YaguchiShimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan. yag@shimoda.tsukuba.ac.jp.ORCID http://orcid.org/0000-0002-8326-5762

Funding

Japan Agency for Medical Research and Development (AMED) 22gm1510007MEXT | Japan Society for the Promotion of Science (JSPS) 19K20406MEXT | Japan Society for the Promotion of Science (JSPS) 23K11312MEXT | Japan Society for the Promotion of Science (JSPS) 23K23933MEXT | JST | Adaptable and Seamless Technology Transfer Program through Target-Driven R and D (Adaptable and Seamless Technology Transfer Program through Target-Driven R&D) JPMJTR204EMEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JPMJPR1945MEXT | JST | Precursory Research for Embryonic Science and Technology (PRESTO) JPMJPR194C
6 · The paper itself

Abstract

Centralized nervous systems enable animals to detect environmental cues and coordinate behavior, but their evolutionary origins in deuterostomes remain unclear. Among deuterostomes, echinoderms-such as sea urchins-have long been thought to lack brain-like structures, especially in larval stages. Although recent gene expression and neural activity studies suggest brain-like properties in sea urchin larvae, direct links to behavior are still emerging. Here, we identify a light-sensitive cluster of neurons in the posterior neuroectoderm of sea urchin larvae. These neurons express UV-sensitive Opsin5 and regulatory genes such as rx, otx, six3, and lhx6, which are conserved in the vertebrate diencephalon. We mapped this domain using single-cell RNA sequencing and in situ hybridization. Knockdown of Opn5L impaired light-dependent swimming, indicating an active role in photoreception. While further work is needed to fully establish circuit-to-behavior relationships, our findings add to growing evidence that sea urchin larvae possess a non-visual photoreceptive neural center with molecular features shared by vertebrate brain regions. This suggests that such domains originated in the deuterostome ancestor and contributed to the early evolution of brain function.

Indexed as

BrainSea UrchinsAnimalsGene Expression Regulation, DevelopmentalHomeodomain ProteinsLarvaNeuronsOpsinsOtx Transcription FactorsSwimmingTranscription FactorsHomeodomain ProteinsOpsinsOtx Transcription FactorsTranscription Factors

Identifiers

PMID41258319
PMCPMC12630818

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.