Evidence map›Paper›PMID 41257079›Full record

ArticlePlant biotechnology (Tokyo, Japan)2025

Expression analysis of genes enriched in the pulvinus of

Akari Harada, Mako Onori, Moeka Ooki, Nobuyuki Kanzawa

Abstract read
In one paragraph

Article in Plant biotechnology (Tokyo, Japan), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Functional Genomics: From Soybean to Legume.International journal of molecular sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Akari HaradaDepartment of Materials and Life Sciences, Faculty of Science and Technology, Sophia University.
Mako OnoriDepartment of Materials and Life Sciences, Faculty of Science and Technology, Sophia University.
Moeka OokiDepartment of Materials and Life Sciences, Faculty of Science and Technology, Sophia University.
Nobuyuki KanzawaDepartment of Materials and Life Sciences, Faculty of Science and Technology, Sophia University.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The pulvinus is a unique motor organ found in leguminous plants. The motor cells surrounding the central vascular bundle of the pulvinus are divided into extensor and flexor halves. The asymmetric change in turgor pressure of the motor cells of the extensor/flexor halves is the driving force behind nyctinastic leaf movement. Omics analysis has recently revealed genes involved in pulvinar development and function, but the molecular mechanism orchestrating the pulvinar movement remains elusive. In this study, we investigated genes predominantly and highly expressed in the pulvinus to find out key genes involved in the regulation of nyctinastic movement. Gene expression in both the pulvinus and stem at dawn and dusk was examined using RNA sequencing analysis. As a result, several genes were identified that preferentially change in expression in the pulvinus at dawn. Among the genes, we first focused on genes that are more highly expressed in the pulvinus than in the stem and validated the results by reverse transcription-polymerase chain reaction (RT-PCR). We further focused on auxin-related genes, as auxin was found to be preferentially expressed in the pulvinus and has been reported to be involved in the regulation of nyctinastic leaf movement. Quantitative real-time PCR and in situ hybridization analyses revealed that at least two auxin-related genes,

Indexed as

auxinleaf movementlegumepulvinustranscriptome

Identifiers

PMID41257079
PMCPMC12622902

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.