Evidence map›Paper›PMID 41256695›Full record

ArticlebioRxiv : the preprint server for biology2025

Cooperative short- and long-range interactions enable robust symmetry breaking and axis formation.

Guoye Guan, Suxuan Wang, T Glenn Shields, Seong Ho Pahng, Claire Xinyu Shao, Juns Ye, Christoph Budjan, Sahand Hormoz

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Guoye GuanDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-4479-4722
Suxuan WangDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0009-0009-2650-6919
T Glenn ShieldsHarvard College, Faculty of Arts and Sciences, Harvard University, Boston, MA 02138, USA.
Seong Ho PahngDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-9247-7425
Claire Xinyu ShaoDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.
Juns YeDepartment of Data Science, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Christoph BudjanDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-1563-9750
Sahand HormozDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-4384-4428

Funding

Tracing the lineage histories and differentiation trajectories of individual cancer cells in myeloproliferative neoplasmsR01HL158269 · NHLBI · DANA-FARBER CANCER INST · PI HORMOZ, SAHAND · 2021 to 2025
$2.3M
NHLBI NIH HHS R01 HL158269
6 · The paper itself

Abstract

The establishment of the anterior-posterior (A-P) axis is the first symmetry-breaking event in mammalian development, transforming initially uniform cell populations into a polarized body plan. Gastruloids, aggregates of embryonic stem cells, recapitulate this transition by reproducibly forming a posterior primitive-streak-like pole. To investigate the underlying physical principles, we constructed a coarse-grained agent-based model representing two radially differentiated cell populations - outer/peripheral and inner/core - interacting via short-range adhesion/surface tension and optional long-range, chemotaxis-like forces. Systematic exploration of this morphogenetic landscape revealed that adhesion alone cannot robustly generate a single axis, often leading to weak or unstable asymmetries. By contrast, introducing long-range attraction among peripheral cells markedly broadened the parameter space for robust symmetry breaking, yielding high morphological asymmetry with minimal cell loss. We further implement a minimal, modular gene regulatory network that partitions cells into outer vs. inner states and gates adhesion and peripheral long-range attraction, converting an inside-outside bias into a stable axis. To facilitate further exploration, we developed

Identifiers

PMID41256695
PMCPMC12621816

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.