Evidence map›Paper›PMID 41256680›Full record

ArticlebioRxiv : the preprint server for biology2025

Toothy: an interactive platform for dentate spike curation.

Amanda L Schott, Kathleen N Esfahany, Julia M Grocott, Jordan S Farrell

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Amanda L SchottF.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA, USA.ORCID 0000-0001-6329-9968
Kathleen N EsfahanyF.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA, USA.ORCID 0000-0002-0141-3259
Julia M GrocottF.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA, USA.
Jordan S FarrellF.M. Kirby Neurobiology Center, Boston Children's Hospital, Boston, MA, USA.ORCID 0000-0002-1209-5559

Funding

Supplement request for Training GrantT32NS007473 · NINDS · CHILDREN'S HOSPITAL BOSTON · PI Elizabeth C. Engle, Thomas L. Schwarz · 1999 to 2026
$6.9M
Dissecting Hypothalamic Pathways for Seizure ControlR00NS126725 · NINDS · BOSTON CHILDREN'S HOSPITAL · PI Jordan Stewart Farrell · 2024 to 2026
$740k
NINDS NIH HHS R00 NS126725NINDS NIH HHS T32 NS007473
6 · The paper itself

Abstract

Dentate spikes (DSs) are hippocampal population events that occur during low-arousal states, defined by large-amplitude positive voltage peaks recorded in the hilus of the dentate gyrus (DG). DSs can be classified into two types (DS1 and DS2), with DS2 linked to transient increases in arousal, brain-wide neural activation, and functional relevance for memory encoding. Despite growing interest in their physiological and functional properties, no standardized framework exists for detecting and classifying DSs. We present Toothy, an open-source tool for DS detection and classification in large-scale electrophysiological recordings. Toothy offers a modular and interactive workflow comprising three key steps: (1) ingestion and preprocessing of local field potential (LFP) recordings, (2) detection of hippocampal population events, and (3) classification of DS types using peri-event current source density (CSD) profiles. To support both flexibility and reproducibility, features include compatibility with multiple recording formats, customizable processing parameters, interactive event review tools, and comprehensive logging of event detection and classification parameters. In addition to DS detection, Toothy can also detect sharp wave-ripples (SPW-Rs; an oscillatory population event recorded in the CA1 region), enabling comparative analysis between DSs and SPW-Rs. Toothy provides a standardized, reproducible pipeline for DS detection and classification, advancing broader efforts towards investigating hippocampal dynamics across diverse settings.

Identifiers

PMID41256680
PMCPMC12621741

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.