Evidence map›Paper›PMID 41253527›Full record

ArticleJournal of chemical information and modeling2025

A Simple Framework for Collaborative Development of Predictive Models Trained on Proprietary Data.

Pablo Rodríguez-Belenguer, Alexander Amberg, Frank Bringezu, Markus Frericks, Jennifer Hemmerich, Peter Monecke, Nils Oberhauser, Panuwat Trairatphisan, Manuel Pastor

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Pablo Rodríguez-BelenguerBiomedical Imaging Research Group (GIBI230), Instituto de Investigación Sanitaria La Fe, Valencia 46026, Spain.
Alexander AmbergSanofi, Preclinical Safety, Industriepark Hoechst, Frankfurt am Main 65926, Germany.
Frank BringezuMerck Healthcare KGaA, Chemical & Preclinical Safety, Darmstadt 64293, Germany.
Markus FrericksBASF SE, Registered Office, Ludwigshafen 67056, Germany.
Jennifer HemmerichBASF SE, Registered Office, Ludwigshafen 67056, Germany.ORCID 0000-0003-0372-8956
Peter MoneckeSanofi, Preclinical Safety, Industriepark Hoechst, Frankfurt am Main 65926, Germany.
Nils OberhauserNovartis Pharma, Basel CH-4056, Switzerland.
Panuwat TrairatphisanSanofi, Preclinical Safety, Industriepark Hoechst, Frankfurt am Main 65926, Germany.
Manuel PastorResearch Programme on Biomedical Informatics (GRIB), Department of Medicine and Life Sciences, Hospital Del Mar Medical Research Institute, Universitat Pompeu Fabra, Barcelona 08003, Spain.ORCID 0000-0001-8850-1341

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a simple methodology that allows the building and sharing of predictive models without compromising the confidentiality of the structures of the training series. Multiple shared models can be used to obtain ensemble models, providing better coverage of the chemical space and better predictions than the original one. This approach is demonstrated in a collaborative exercise where four pharmaceutical and chemical companies developed predictive models for the AMES mutagenicity end point and shared them to build ensemble models using logical and machine learning algorithms. The results were systematically analyzed and compared, obtaining clear benefits in predictive quality. The method has the advantage of being very simple to execute, using only open-source software, and the possibility to audit the whole process and interchange files to guarantee that no confidential information is exported from the company facilities.

Indexed as

Machine LearningAlgorithmsMutagenicity Tests

Identifiers

PMID41253527
PMCPMC12690581

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.