Evidence map›Paper›PMID 41253159›Full record

ArticleImmunity2025

Sequential class switching generates antigen-specific gut IgA from IgG1 B cells.

Emily R Siniscalco, Hailong Meng, Gisela Gabernet, Gaspar A Pacheco, Shahab Saghaei, Sydney I Ramirez, L Benjamin Hills, Farhoud Faraji, Shuting Chen, Xiangyun Yin and 12 more

Abstract read
In one paragraph

Article in Immunity, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Germinal center responses at barrier organ sites.Current opinion in immunology · 2026
    Review
  3. Highlights of 2025: advances in germinal centers.Immunology and cell biology · 2026
    Review
  4. Review
  5. Article
  6. Article
  7. Extrafollicular and other non-germinal center B cell responses.Journal of immunology (Baltimore, Md. : 1950) · 2026
    Review
  8. Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Emily R SiniscalcoDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA; Center for Human Immunobiology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Hailong MengDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.
Gisela GabernetDepartment of Pathology, Yale School of Medicine, New Haven, CT 06520, USA.
Gaspar A PachecoDepartment of Medicine, Division of Allergy and Clinical Immunology, Division of Genetics, Brigham and Women's Hospital Boston, Boston, MA 02115, USA; Harvard Medical School, Boston, MA 02115, USA; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; The Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA.
Shahab SaghaeiDepartment of Medicine, Division of Allergy and Clinical Immunology, Division of Genetics, Brigham and Women's Hospital Boston, Boston, MA 02115, USA; Harvard Medical School, Boston, MA 02115, USA; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; The Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA.
Sydney I RamirezDepartment of Medicine (Infectious Diseases), University of California, San Diego School of Medicine, La Jolla, CA 92093, USA; La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
L Benjamin HillsLa Jolla Institute for Immunology, La Jolla, CA 92037, USA; Department of Pediatrics, Division of Hematology and Oncology, University of California, San Diego, La Jolla, CA 92093, USA.
Farhoud FarajiLa Jolla Institute for Immunology, La Jolla, CA 92037, USA; Department of Otolaryngology-Head and Neck Surgery, University of California, San Diego, La Jolla, CA, USA.
Shuting ChenDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA.
Xiangyun YinDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA; Department of Ophthalmology and Visual Science, Yale School of Medicine, New Haven, CT, USA.
Christine DienDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA; Department of Pathology, Yale School of Medicine, New Haven, CT 06520, USA; Section of Rheumatology, Allergy and Immunology, Yale School of Medicine, New Haven, CT 06520, USA; Yale Center for Systems and Engineering Immunology, Yale School of Medicine, New Haven, CT 06520, USA.
Laura R HoytDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA.
Elise G LiuSection of Rheumatology, Allergy and Immunology, Yale School of Medicine, New Haven, CT 06520, USA.
Abel BarrettWovenBit LLC, New Haven, CT 06510, USA.
Neima BriggsDepartment of Medicine (Infectious Diseases), Yale School of Medicine, New Haven, CT 06520, USA.
Adam WilliamsCenter for Human Immunobiology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA; Department of Medicine (Allergy and Immunology), Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Vipul ShuklaCenter for Human Immunobiology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA; Deptartment of Cell and Developmental Biology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA.
Shane CrottyDepartment of Medicine (Infectious Diseases), University of California, San Diego School of Medicine, La Jolla, CA 92093, USA; La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Duane R WesemannDepartment of Medicine, Division of Allergy and Clinical Immunology, Division of Genetics, Brigham and Women's Hospital Boston, Boston, MA 02115, USA; Harvard Medical School, Boston, MA 02115, USA; The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA; The Ragon Institute of MGH, MIT, and Harvard, Cambridge, MA 02139, USA.
Steven H KleinsteinDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA; Department of Pathology, Yale School of Medicine, New Haven, CT 06520, USA; Program in Computational Biology and Bioinformatics, Yale School of Medicine, New Haven, CT 06520, USA.
Joe CraftDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA; Section of Rheumatology, Allergy and Immunology, Yale School of Medicine, New Haven, CT 06520, USA. Electronic address: joseph.craft@yale.edu.
Stephanie C EisenbarthDepartment of Immunobiology, Yale School of Medicine, New Haven, CT 06520, USA; Center for Human Immunobiology, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA; Department of Medicine (Allergy and Immunology), Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA. Electronic address: stephanie.eisenbarth@northwestern.edu.

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI Eric P. Winer · 1985 to 2026
$85.0M
T follicular helper (Tfh) CD4+ T cell, germinal center, and antibody response dysfunction in human recurrent tonsillitisU19AI142742 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Shane P Crotty · 2019 to 2026
$32.8M
RESEARCH IN INFECTIOUS DISEASEST32AI007036 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NIZET, VICTOR · 1985 to 2025
$9.2M
IMMUNE RESPONSES IN LUPUSR37AR040072 · NIAMS · YALE UNIVERSITY · PI CRAFT, JOSEPH EDGAR · 2000 to 2025
$7.4M
Immune Mechanisms Regulating AllergyR01AI136942 · NIAID · YALE UNIVERSITY · PI Stephanie Caroline Eisenbarth, ADAM WILLIAMS · 2018 to 2026
$5.1M
Pathogenesis of Lupus NephritisR01AI152443 · NIAID · YALE UNIVERSITY · PI Joseph Edgar Craft · 2020 to 2026
$3.8M
COMPUTATIONAL TOOLS FOR THE ANALYSIS OF HIGH-THROUGHPUT IMMUNOGLOBULIN SEQUENCING EXPERIMENTSR01AI104739 · NIAID · YALE UNIVERSITY · PI KLEINSTEIN, STEVEN H. · 2014 to 2022
$3.6M
Antibody Durability DynamicsR01AI170715 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI Duane R. Wesemann · 2022 to 2026
$3.4M
Determinants of oral anaphylaxis to foodR01AI168016 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Stephanie Caroline Eisenbarth, ADAM WILLIAMS · 2023 to 2026
$3.2M
Understanding IgE BiologyR01AI158811 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI WESEMANN, DUANE R. · 2022 to 2025
$3.0M
Regulation of germinal center homeostasis by the BAF complexR01AI187142 · NIAID · NORTHWESTERN UNIVERSITY · PI Vipul Shukla · 2025 to 2026
$1.2M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysisS10OD030363 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2022 to 2022
$1.2M
NCI NIH HHS P30 CA016359NCI NIH HHS R00 CA248835NIAID NIH HHS R01 AI104739NIAID NIH HHS R01 AI136942NIAID NIH HHS R01 AI152443NIAID NIH HHS R01 AI158811NIAID NIH HHS R01 AI168016NIAID NIH HHS R01 AI170715NIAID NIH HHS R01 AI187142NIAID NIH HHS T32 AI007036NIAID NIH HHS U19 AI142742NIAMS NIH HHS R37 AR040072NIH HHS S10 OD030363
6 · The paper itself

Abstract

Immunoglobulin (Ig)A is the primary isotype protecting the gut barrier, yet fundamental aspects of antigen-specific IgA induction remain unknown. Gut lymphoid organs are chronically exposed to foreign antigens, are structurally different from other lymphoid tissues, and are functionally unique. This suggests gut IgA induction occurs through noncanonical means. Indeed, we observed the generation of affinity-matured IgA B cells through both germinal center (GC) and nonGC pathways. Although most antibody isotypes are generated directly from naive IgM B cells, we discovered that IgG1 GC B cells can generate gut mucosal IgA in mice, with a similar relationship in mucosal and non-mucosal sites in humans. This supports a model of IgA generation through sequential class switching, linking the specificity of mucosal IgA and systemic IgG1 humoral immunity to gut-derived antigens. Defining these pathways is essential for the design of mucosal vaccines, which need to generate IgA and IgG antibodies for efficient barrier and systemic protection.

Indexed as

B-LymphocytesImmunoglobulin AImmunoglobulin Class SwitchingImmunoglobulin GIntestinal MucosaAnimalsAntigensGerminal CenterHumansImmunity, HumoralImmunity, MucosalMiceMice, Inbred C57BLAntigensImmunoglobulin AImmunoglobulin Gaffinity maturationB cellBCR sequencingclass switch recombinationgerminal centersgut immunityIgAmucosal vaccinationPeyer's patchplasma cell

Identifiers

PMID41253159
PMCPMC12834128

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.