ReviewMarine biotechnology (New York, N.Y.)2025
Current State of Fish Reference Genome and Pangenome: Methodologies, Sampling Strategies, Quality Assessment and Future Perspectives to Aquaculture Breeding.
Review in Marine biotechnology (New York, N.Y.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
1 citing paper in PubMed.
- The pangenome ofiScience · 2026Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genome research has dominated life sciences research in the last two decades. Of approximately 11,000 sequenced vertebrate genomes, genomes of teleost fish represent about 30%, with reference genome sequences available for most aquaculture fish species. While such progress has accelerated progress in aquaculture genetics research and breeding, it is clear that understanding of full genomic variations among aquaculture species is lacking. This is largely because of the way reference genomic sequences were produced, with a single or just a few genomes being sequenced. In addition, haplotype variations and their representation in the species or population are unknown. This hinders understanding of genomic basis of phenotypic variations relevant to performance and production traits such as growth rates, feed conversion efficiency, disease resistance, stress responses, processing yields, and reproductive traits, among other traits, especially so with strain-specific performance traits. The pangenome refers to a whole collection of genomic sequences found in the entire species or population rather than in a single individual, as represented in reference genomes. Pangenome includes the core genome sequence that are shared in all individuals, and variable or dispensable genome sequence found in a subset of individuals, representing intraspecies genomic variations. In this review, we present the current state of reference genomes and reference pangenomes, compare the advantages and disadvantages of various methods in producing pangenomes, propose the concept of pangenome plus (pangenome
Indexed as
Identifiers
41251872What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.