Evidence map›Paper›PMID 41251360›Full record

ArticleJournal of clinical microbiology2025

Comparison of manual and automated ultrasensitive assays for residual HIV-1 in plasma from individuals on suppressive antiretroviral therapy.

Sonia Bakkour Coco, Mars Stone, Xutao Deng, Yunfei Wang, Wes Rountree, Salvatore R Scianna, Leilani Montalvo, Melanie Dimapasoc, Martin Stengelin, George Sigal and 12 more

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Sonia Bakkour CocoVitalant Research Institute, San Francisco, California, USA.ORCID 0000-0001-8773-0740
Mars StoneVitalant Research Institute, San Francisco, California, USA.
Xutao DengVitalant Research Institute, San Francisco, California, USA.
Yunfei WangDuke Human Vaccine Institute, Duke University Medical Center, Durham, North Carolina, USA.ORCID 0000-0002-3205-6338
Wes RountreeDuke Human Vaccine Institute, Duke University Medical Center, Durham, North Carolina, USA.ORCID 0000-0001-5183-6949
Salvatore R SciannaDuke Human Vaccine Institute, Duke University Medical Center, Durham, North Carolina, USA.
Leilani MontalvoVitalant Research Institute, San Francisco, California, USA.
Melanie DimapasocVitalant Research Institute, San Francisco, California, USA.ORCID 0000-0003-0328-315X
Martin StengelinMeso Scale Diagnostics, LLC., Rockville, Maryland, USA.
George SigalMeso Scale Diagnostics, LLC., Rockville, Maryland, USA.ORCID 0000-0001-7149-6400
Guoxin WuMerck & Co., Inc., Rahway, New Jersey, USA.
Bonnie J HowellMerck & Co., Inc., Rahway, New Jersey, USA.
Sarah PalmerThe Westmead Institute for Medical Research, The University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0002-9195-3805
Cheryl JenningsRush University Medical Center, Chicago, Illinois, USA.ORCID 0009-0002-3508-5350
Douglas D RichmanUniversity of California San Diego, La Jolla, California, USA.ORCID 0000-0003-0962-9254
Robert J GorelickAIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA.ORCID 0000-0002-1773-9085
Gregory M LairdAccelevir Diagnostics, Baltimore, Maryland, USA.ORCID 0000-0003-2873-4295
Albine MartinAccelevir Diagnostics, Baltimore, Maryland, USA.
Jana L JacobsDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-0322-585X
John W MellorsDepartment of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-3737-9742
Steven G DeeksDepartment of Medicine, Division of HIV, Infectious Diseases & Global Medicine, University of California San Francisco, San Francisco, California, USA.ORCID 0000-0001-6371-747X
Michael P BuschVitalant Research Institute, San Francisco, California, USA.ORCID 0000-0002-1446-125X

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUSAN JANET LITTLE · 1994 to 2026
$78.4M
NIAID VIROLOGY QUALITY ASSURANCE (VQA) COVID-1975N93019C00015 · NIAID · DUKE UNIVERSITY · PI DENNY, THOMAS · 2019 to 2025
$24.4M
Centralized Resource to Accurately Quantify Latent and Expressed HIV ReservoirsU24AI143502 · NIAID · ACCELEVIR DIAGNOSTICS, LLC · PI LAIRD, GREGORY MICHAEL, MARTIN, ALBINE · 2020 to 2024
$4.9M
Opening a window into immune system signaling at the fg/ml levelU24AI118663 · NIAID · MESO SCALE DIAGNOSTICS, LLC · PI STENGELIN, MARTIN · 2015 to 2019
$2.3M
Centralized Resource to Accurately Quantify Latent and Expressed HIVReservoirsR24AI143502 · NIAID · ACCELEVIR DIAGNOSTICS, LLC · PI Gregory Michael Laird, Albine Martin · 2025 to 2026
$2.1M
CCR NIH HHS HHSN261200800001CGates Foundation INV-008500National Institute of Allergy and Infectious Diseases HHS75N93019C00015National Institute of Allergy and Infectious Diseases P30AI036214National Institute of Allergy and Infectious Diseases U24AI118663National Institute of Allergy and Infectious Diseases U24AI143502NCI NIH HHS 75N91019D00024NCI NIH HHS HHSN261200800001ENIAID NIH HHS 75N93019C00015NIAID NIH HHS P30 AI036214NIAID NIH HHS R24 AI143502NIAID NIH HHS U24 AI118663NIAID NIH HHS U24 AI143502
6 · The paper itself

Abstract

Several nucleic acid and antigen assays have been developed to detect HIV in plasma at levels below the detection limit of standard clinical assays; however, comparative assessment of performance of these ultrasensitive assays on identical panels has been limited. Here, we report the relative performance characteristics of three manual (ultracentrifugation concentration and laboratory-developed PCR) and two automated commercial assays for single-copy detection of HIV RNA, as well as two ultrasensitive HIV p24 assays, using blinded panels of plasma samples containing HIV at low concentrations. Independent sample sets were studied in two phases: in the first phase, qualification panels consisted of analytic standards in serial dilution and clinical plasma samples from virologically suppressed people with HIV (PWH). HIV detection in clinical samples was infrequent using the ultrasensitive p24 assays (mean 11%). In contrast, a higher proportion of the same samples were detected using single-copy RNA assays (mean 61%). In the second phase, evaluation panels of clinical plasma samples ( IMPORTANCE: Most people with HIV (PWH) on antiretroviral therapy have viral loads below the detection limit of clinical assays, yet virus is often present and detectable at very low levels using ultrasensitive research assays. Clinical trials evaluating curative interventions and interpreting outcomes of analytical treatment interruptions depend on reliable assays to assess and quantify changes in HIV persistence often at very low levels. We conducted a two-stage head-to-head, blinded comparison of multiple ultrasensitive HIV RNA and p24 assays, first using 50 low viral load plasma samples, then further evaluating the top-performing assays on a 144-member blinded panel composed of duplicate contrived and clinical specimens from well-suppressed PWH. Single-copy RNA methods performed better than p24 assays, and a fully automated, 9-replicate commercial RNA assay demonstrated high sensitivity, reproducibility across laboratories, and practical scalability that can be applied to measure the impact of interventions in HIV cure trials.

Indexed as

Anti-HIV AgentsHIV-1HIV InfectionsMolecular Diagnostic TechniquesAutomation, LaboratoryHIV Core Protein p24HumansLimit of DetectionReproducibility of ResultsRNA, ViralSensitivity and SpecificityViral LoadAnti-HIV AgentsHIV Core Protein p24RNA, Viralantiretroviral therapyHIVHIV persistenceresidual HIV viremia

Identifiers

PMID41251360
PMCPMC12710318

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.