Evidence map›Paper›PMID 41249827›Full record

ArticleScientific reports2025

Integrating machine learning and molecular dynamics simulation to decipher the molecular network of dioxin-associated liposarcoma.

Zhang Chenhe, Zhuang Aobo, Zhou Xiao, Gao Han, Wang Longshang, Xi Zhe, Cheng Yingxue, Li Huichen, Wu Jincheng, Zeng Wei and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zhang Chenhe *Cancer Research Center, School of Medicine, Xiang'an Hospital of Xiamen University, Xiamen University, Xiamen, China.
Zhuang Aobo *Cancer Research Center, School of Medicine, Xiang'an Hospital of Xiamen University, Xiamen University, Xiamen, China.
Zhou Xiao *Cancer Research Center, School of Medicine, Xiang'an Hospital of Xiamen University, Xiamen University, Xiamen, China.
Gao Han *Cancer Research Center, School of Medicine, Xiang'an Hospital of Xiamen University, Xiamen University, Xiamen, China.
Wang LongshangCancer Research Center, School of Medicine, Xiang'an Hospital of Xiamen University, Xiamen University, Xiamen, China.
Xi ZheCancer Research Center, School of Medicine, Xiang'an Hospital of Xiamen University, Xiamen University, Xiamen, China.
Cheng YingxueCancer Research Center, School of Medicine, Xiang'an Hospital of Xiamen University, Xiamen University, Xiamen, China.
Li HuichenDepartment of Colorectal Surgery, Tianjin Union Medical Center, The First Affiliated Hospital of Nankai University, Tianjin, 300121, China. lihuichen888@sina.cn.
Wu JinchengDepartment of General Surgery, School of Medicine, The First Affiliated Hospital of Xiamen University, Xiamen University, Xiamen, 361102, China. 919656082@qq.com.
Zeng WeiCancer Research Center, School of Medicine, Xiang'an Hospital of Xiamen University, Xiamen University, Xiamen, China. weizeng2166@163.com.
Li WengangCancer Research Center, School of Medicine, Xiang'an Hospital of Xiamen University, Xiamen University, Xiamen, China. lwgang@xmu.edu.cn.

Funding

ANIMAL HUSBANDRY SUPPORT SERVICES FOR NIEHS27304C0002 · NIEHS · 2007 to 2008
$5.0M
Joint Laboratory of School of Medicine, Xiamen University-Shanghai Jiangxia Blood Technology Co., Ltd. XDHT2020010CJoint Research Center of School of Medicine, Xiamen University-Jiangsu Charity Biotech Co., Ltd. 20233160C0002National Natural Science Foundation of China 82272935NIEHS NIH HHS 27304C0002NIEHS NIH HHS 27306C0002the Basic Scientific Research Project for Provincial Public Welfare Research Institutes of the Fujian Provincial Department of Science and Technology 2023R1037the Natural Science Foundation of the Xiamen Municipal Bureau of Science and Technology 3502Z202372093Xinjiang Uyghur Autonomous Region Natural Science Foundation 2023D01A56
6 · The paper itself

Abstract

Dioxin-like pollutants, especially 2,3,7,8-Tetrachlorodibenzo-p-dioxin, are recognized human carcinogens. Retrospective studies suggest a link between dioxins and soft tissue sarcomas, including liposarcoma, but mechanisms remain unclear. This study explores the toxicological effects of dioxins on liposarcoma, identifies key proteins, and proposes potential solutions. We identified dioxin- and liposarcoma-related targets via databases, analyzed overlaps through enrichment and network toxicology, and validated them with phenotypic and clinical data. We built a prediction model using 117 combinations of machine learning algorithms, confirmed the results with molecular docking and simulations, and proposed therapies through drug experiments. TCDD modulates adipocytic malignancy through activation of xenobiotic response pathways, disruption of cellular metabolism, and interactions with cancer-related receptors. AhR partially mediates this toxicological effect, and five key proteins, including CDH3, ADORA2B, MMP14, IP6K2, and HTR2A, are used to predict the development of dioxin-related liposarcoma. The selective HTR2A receptor antagonist ketanserin has the potential to alleviate this toxicological impact. Our study presents an efficient, cost-effective toxicological analysis using network toxicology, offering new insights into dioxin-associated liposarcoma.

Indexed as

DioxinsLiposarcomaMachine LearningMolecular Dynamics SimulationHumansMolecular Docking SimulationPolychlorinated DibenzodioxinsReceptors, Aryl HydrocarbonDioxinsPolychlorinated DibenzodioxinsReceptors, Aryl HydrocarbonDioxinKetanserin.LiposarcomaMachine learningNetwork toxicology

Identifiers

PMID41249827
PMCPMC12623788

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.