Evidence map›Paper›PMID 41249782›Full record

ArticleScientific data2025

Haplotype-resolved genome assembly of the leading cultivar of jujube (Ziziphus jujuba Mill. 'Huizao').

Yihan Yang, Shufeng Zhang, Yunxin Lan, Zhongchen Zhang, Donghui Lin, Jiao Li, Jingjing Guo, Jian Shen, Qing Hao, Meng Yang and 1 more

Abstract readDataset
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yihan YangCollege of Horticulture, Hebei Agricultural University, Baoding, 071000, China.
Shufeng ZhangCollege of Horticulture, Hebei Agricultural University, Baoding, 071000, China.
Yunxin LanCollege of Horticulture, Hebei Agricultural University, Baoding, 071000, China.
Zhongchen ZhangCollege of Horticulture, Hebei Agricultural University, Baoding, 071000, China.
Donghui LinCollege of Horticulture, Hebei Agricultural University, Baoding, 071000, China.
Jiao LiCollege of Horticulture, Hebei Agricultural University, Baoding, 071000, China.
Jingjing GuoCollege of Horticulture, Hebei Agricultural University, Baoding, 071000, China.
Jian ShenCollege of Horticulture, Hebei Agricultural University, Baoding, 071000, China.
Qing HaoInstitute of Horticulture Crops, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China.
Meng YangCollege of Horticulture, Hebei Agricultural University, Baoding, 071000, China. biomichael@163.com.ORCID 0000-0002-2672-3069
Mengjun LiuCollege of Horticulture, Hebei Agricultural University, Baoding, 071000, China. kjliu@hebau.edu.cn.

Funding

National Natural Science Foundation of China (National Science Foundation of China) NO.32171817Natural Science Foundation of Hebei Province (Hebei Provincial Natural Science Foundation) NO. C2022204030
6 · The paper itself

Abstract

'Huizao' is a leading jujube (Ziziphus jujuba Mill.) variety valued for its high-quality dry fruit. Using PacBio HiFi long reads and Hi-C data, we generated a high-quality, chromosome-level, haplotype-resolved genome assembly for this cultivar, with genome sizes of 371.22 Mb and 385.42 Mb for the two haplotypes, and corresponding N50 values of 30.69 Mb and 31.26 Mb. Over 99.9% of the assembled sequences were anchored to 12 chromosomes. Genome annotation identified 32,065 protein-coding genes in Hap1 and 33,004 in Hap2, with 29,874 allelic gene pairs supported by collinearity and sequence similarity. Comparative analyses revealed extensive structural variants and allelic differences between the two haplotypes. This high-quality assembly addresses a critical gap in genomic resources for the 'Huizao' cultivar and provides a valuable foundation for allele-aware analyses, molecular breeding, and genetic diversity research in jujube.

Indexed as

Genome, PlantHaplotypesZiziphusChromosomes, Plant

Identifiers

PMID41249782
PMCPMC12623864

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.