Evidence map›Paper›PMID 41249568›Full record

ArticleCommunications biology2025

Distinctive and functional pigment arrangements in Lhcp, a prasinophyte-specific photosynthetic light-harvesting complex.

Soichiro Seki, Masato Kubota, Nami Yamano, Eunchul Kim, Asako Ishii, Tomoko Miyata, Hideaki Tanaka, Richard J Cogdell, Jian-Ping Zhang, Keiichi Namba and 3 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Soichiro SekiGraduate School of Science, Osaka City University, Osaka Metropolitan University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka, Japan. s-seki@protein.osaka-u.ac.jp.ORCID http://orcid.org/0000-0003-4706-4696
Masato KubotaDivision of Environmental Photobiology, National Institute for Basic Biology, 38 Nishigonaka, Myodaiji, Okazaki, Aichi, Japan.
Nami YamanoFaculty of Science, Fukuoka University, Fukuoka, Japan, 7-19-1 Nanakuma, Jyonan-ku.
Eunchul KimDivision of Environmental Photobiology, National Institute for Basic Biology, 38 Nishigonaka, Myodaiji, Okazaki, Aichi, Japan.ORCID http://orcid.org/0000-0003-3380-3953
Asako IshiiDivision of Environmental Photobiology, National Institute for Basic Biology, 38 Nishigonaka, Myodaiji, Okazaki, Aichi, Japan.
Tomoko MiyataGraduate School of Frontier Biosciences, Osaka University, Yamadaoka, Suita, Osaka, Japan.ORCID http://orcid.org/0000-0002-5543-7459
Hideaki TanakaInstitute for Protein Research, Osaka University, Yamadaoka, Suita, Osaka, Japan.
Richard J CogdellInstitute of Molecular, Cell and Systems Biology, University of Glasgow, Glasgow, Scotland.ORCID http://orcid.org/0000-0003-2119-6607
Jian-Ping ZhangKey Laboratory of Advanced Light Conversion Materials and Biophotonics, School of Chemistry and Life Resources, Renmin University of China, Haidian District, Beijing, PR China.
Keiichi NambaGraduate School of Frontier Biosciences, Osaka University, Yamadaoka, Suita, Osaka, Japan.ORCID http://orcid.org/0000-0003-2911-5875
Genji KurisuInstitute for Protein Research, Osaka University, Yamadaoka, Suita, Osaka, Japan.ORCID http://orcid.org/0000-0002-5354-0807
Jun MinagawaDivision of Environmental Photobiology, National Institute for Basic Biology, 38 Nishigonaka, Myodaiji, Okazaki, Aichi, Japan.ORCID http://orcid.org/0000-0002-3028-3203
Ritsuko FujiiGraduate School of Science, Osaka City University, Osaka Metropolitan University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka, Japan. ritsuko@omu.ac.jp.ORCID http://orcid.org/0000-0003-1492-109X

Funding

Japan Agency for Medical Research and Development (AMED) JP23ama121001Japan Agency for Medical Research and Development (AMED) JP23ama121003MEXT | Japan Society for the Promotion of Science (JSPS) 23H04958MEXT | Japan Society for the Promotion of Science (JSPS) K23KJ1834MEXT | Japan Society for the Promotion of Science (JSPS) KAKENHI 23K05721MEXT | Japan Society for the Promotion of Science (JSPS) KAKENHI 24H02091MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR20E1
6 · The paper itself

Abstract

Light harvesting is essential for photosynthesis, and the diversity of light-harvesting systems enables photosynthetic organisms to acquire unique niches and thrive. Prasinophytes are marine green algae that diverge early in the evolution of photosynthetic eukaryotes and use a distinct light-harvesting complex known as Lhcp as their primary antenna. Lhcp consists of proteins and pigments unique to prasinophytes but shares some structural and functional features with the plant-type light-harvesting complex LHCII. Here, we use cryo-electron microscopy to determine the structure of Lhcp from the prasinophyte Ostreococcus tauri at 1.94 Å resolution, revealing all pigments responsible for light harvesting. The results show that the trimeric structure of Lhcp is stabilized by pigments, including a distinctive carotenoid identified as the cis-isomer of esterified antheraxanthin B. Comparison of Lhcp and plant-type LHCII reveals that while their core architecture is conserved, structural differences underlie their functional divergence. This work provides insight into the evolution of light-harvesting systems and highlights how structural diversity contributes to ecological adaptation.

Indexed as

ChlorophytaLight-Harvesting Protein ComplexesPhotosynthesisPigments, BiologicalCryoelectron MicroscopyModels, MolecularLight-Harvesting Protein ComplexesPigments, Biological

Identifiers

PMID41249568
PMCPMC12624006

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.