Evidence map›Paper›PMID 41249200›Full record

ArticleScientific data2025

A complete telomere-to-telomere assembly of Oryza sativa L. subsp. indica Kato T197 genome.

Tianyuan Zhang, Yi Zhang, Xiao Tang, Wenyan Peng, Hongjun Xie, Yangqin Xie, Yuchen Zhao, Lulu Yang, Yinghong Yu, Mingdong Zhu

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Tianyuan Zhang *State Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha, 410125, China.ORCID 0000-0001-8968-563X
Yi Zhang *State Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha, 410125, China.
Xiao TangState Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha, 410125, China.
Wenyan PengState Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha, 410125, China.
Hongjun XieState Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha, 410125, China.ORCID 0009-0000-4283-8109
Yangqin XieWuhan Benagen Technology Co., Ltd, Wuhan, 430000, China.ORCID 0000-0002-8166-7071
Yuchen ZhaoWuhan Benagen Technology Co., Ltd, Wuhan, 430000, China.ORCID 0009-0000-0819-9374
Lulu YangWuhan Benagen Technology Co., Ltd, Wuhan, 430000, China.ORCID 0000-0002-0365-4179
Yinghong YuState Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha, 410125, China. yyh30678@163.com.ORCID 0009-0003-9621-8396
Mingdong ZhuState Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha, 410125, China. uhz_uhz@hotmail.com.ORCID 0000-0002-8610-1915

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here, we report the complete Telomere-to-Telomere (T2T) genome of Oryza sativa L. subsp. indica Kato T197 from China. The 12 chromosomes were assembled employing a length of 395 Mbp, and a G + C content of 43.62% with 0 gap. We identify the 56,908 protein-coding genes, of which 56,016 (98.42%) were functionally annotated. Repetitive elements accounted for 218.8 Mb (55.38%) of the genome. Compared to the gap-free genome of ZS97, 878,662 genomic variants were identified. Our findings provide a high-quality genomic resource for functional genomics, evolutionary studies, and molecular breeding of indica rice.

Indexed as

Genome, PlantOryzaTelomereChinaChromosomes, PlantRepetitive Sequences, Nucleic Acid

Identifiers

PMID41249200
PMCPMC12623907

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.