Evidence map›Paper›PMID 41247054›Full record

Trial reportMicrobiology spectrum2026

Diagnostic performance of upper airway sampling sites for SARS-CoV-2 and influenza testing.

Mary Lopez-Perez, Thomas Benfield, Kathrine K Jakobsen, Mette Hyldig Dal, Sabrina Dandanell Stange, Annette Kjær Ersbøll, Helene Larsen, Sanne Schou Berger, Tobias Gredal, Christian von Buchwald and 2 more

Registry-linked trialAbstract readRandomized Controlled Trial
In one paragraph

Trial report in Microbiology spectrum, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05765838 (Combined Molecular Testing for Influenza, SARS-CoV-2, and RSV RNA From Different Upper Airway Specimens.), which is not on this map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05765838 naunknown statusnot on this map

Combined Molecular Testing for Influenza, SARS-CoV-2, and RSV RNA From Different Upper Airway Specimens.

TypeinterventionalSponsorRigshospitalet, DenmarkRan2023 to 2023Enrolled250ConditionsInfluenza, COVID-19, RSV InfectionArms(NPS right - Nasal swab left - OPS), (NPS left - Nasal swab right - OPS), (Nasal swab right - NPS left - OPS), (Nasal swab left - NPS right - OPS), (NPS right - OPS - Nasal swab left)
3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Mary Lopez-PerezDepartment of Immunology and Microbiology, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0002-9876-0248
Thomas BenfieldDepartment of Clinical Medicine, University of Copenhagen, Copenhagen, Denmark.
Kathrine K JakobsenDepartment of Otorhinolaryngology, Head and Neck Surgery and Audiology, Rigshospitalet-Copenhagen University Hospital, Copenhagen, Denmark.
Mette Hyldig DalDepartment of Otorhinolaryngology, Head and Neck Surgery and Audiology, Rigshospitalet-Copenhagen University Hospital, Copenhagen, Denmark.
Sabrina Dandanell StangeDepartment of Otorhinolaryngology, Head and Neck Surgery and Audiology, Rigshospitalet-Copenhagen University Hospital, Copenhagen, Denmark.
Annette Kjær ErsbøllCopenhagen Emergency Medical Services, University of Copenhagen, Copenhagen, Denmark.
Helene LarsenCentre for Diagnostics, Department of Health Technology, Technical University of Denmark (DTU), Lyngby, Denmark.
Sanne Schou BergerCentre for Diagnostics, Department of Health Technology, Technical University of Denmark (DTU), Lyngby, Denmark.
Tobias GredalCopenhagen Emergency Medical Services, University of Copenhagen, Copenhagen, Denmark.
Christian von BuchwaldDepartment of Clinical Medicine, University of Copenhagen, Copenhagen, Denmark.
Nikolai KirkbyDepartment of Clinical Immunology, Rigshospitalet-Copenhagen University Hospital, Copenhagen, Denmark.
Tobias TodsenDepartment of Clinical Medicine, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0003-3267-3560

Funding

Novo Nordisk Fonden NNF21SA0069151
6 · The paper itself

Abstract

Early diagnosis of upper respiratory infections is essential to control infectious disease transmission within the community and to initiate relevant antiviral treatments. Nonetheless, variable sensitivities of sampling sites are often overlooked. We conducted a clinical trial at a COVID-19 outpatient test center, where healthcare workers collected nasopharyngeal, throat, nasal swabs, and saliva specimens. Each specimen was tested by RT-PCR for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), influenza virus A and B, and respiratory syncytial virus (RSV). Clinical information was collected at enrollment and again 13 months later using an online questionnaire. From 4 March to 31 March 2023, 253 individuals were enrolled. Data from 250 participants were included in the analysis. SARS-CoV-2 was the most frequent viral infection (48%), followed by influenza A or B (5%), and a combination of SARS-CoV-2 and influenza (9%). RSV was not detected in any specimen. Several participants carried two or three viruses simultaneously. Throat swabs were significantly more sensitive for detecting SARS- CoV-2 (79%) and influenza (64%) than samples from other sites. In contrast, saliva had the lowest sensitivity for SARS- CoV-2 (43 % ) and was unsuitable for detecting influenza. The sensitivity for SARS- CoV-2 (88 % ) and influenza (100 % ) improved when results from throat and nasal swabs were combined. Throat swabs were more sensitive than nasopharyngeal swabs and saliva for molecular detection of SARS-CoV-2 and influenza. A combined throat and nasal swab is highly recommended to increase test sensitivity in patients presenting with upper respiratory infection symptoms. IMPORTANCE: Upper respiratory infections are the most common condition in primary care. Therefore, their early diagnosis is essential to control infectious disease transmission within the community. Here, we show that throat swabs were more sensitive than nasopharyngeal swabs and saliva for detecting severe acute respiratory syndrome coronavirus 2. Furthermore, throat and nasal swabs were more effective in detecting influenza compared to nasopharyngeal swabs. CLINICAL TRIALS: Registered at ClinicalTrials.gov NCT05765838.

Indexed as

COVID-19Influenza, HumanRespiratory Tract InfectionsSARS-CoV-2Specimen HandlingAdolescentAdultAgedFemaleHumansInfluenza A virusInfluenza B virusMaleMiddle AgedNasopharynxPharynxdiagnosisinfluenzaSARS-CoV-2upper respiratory tract

Identifiers

PMID41247054
PMCPMC12772246

What OpenQuestion holds

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LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.