Evidence map›Paper›PMID 41246183›Full record

ReviewEnvironmental science & technology letters2025

FAIR and Effective Communication of Data on Chemical Contaminant Biotransformation in the Environment.

Stephanie L Rich, Jasmin Hafner, Moritz Salz, Mojtaba Qanbarzadeh, Fanshu Geng, Liqing Yan, Jinxia Liu, Damian E Helbling, Christopher P Higgins, Kathrin Fenner

Abstract readReview
In one paragraph

Review in Environmental science & technology letters, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Stephanie L RichDepartment of Chemistry, University of Zürich, 8057 Zürich, Switzerland.ORCID https://orcid.org/0000-0002-7013-1028
Jasmin HafnerDepartment of Chemistry, University of Zürich, 8057 Zürich, Switzerland.ORCID https://orcid.org/0000-0002-1474-5869
Moritz SalzDepartment of Chemistry, University of Zürich, 8057 Zürich, Switzerland.
Mojtaba QanbarzadehDepartment of Civil and Environmental Engineering, Colorado School of Mines, Golden, Colorado 80401, United States.
Fanshu GengSchool of Civil and Environmental Engineering, Cornell University, Ithaca, New York 14850, United States.ORCID https://orcid.org/0000-0001-9414-6913
Liqing YanSchool of Civil and Environmental Engineering, Cornell University, Ithaca, New York 14850, United States.
Jinxia LiuDepartment of Civil Engineering, McGill University, Montreal, QC H3A 0C3, Canada.ORCID https://orcid.org/0000-0003-2505-9642
Damian E HelblingSchool of Civil and Environmental Engineering, Cornell University, Ithaca, New York 14850, United States.ORCID https://orcid.org/0000-0003-2588-145X
Christopher P HigginsDepartment of Civil and Environmental Engineering, Colorado School of Mines, Golden, Colorado 80401, United States.ORCID https://orcid.org/0000-0001-6220-8673
Kathrin FennerDepartment of Chemistry, University of Zürich, 8057 Zürich, Switzerland.ORCID https://orcid.org/0000-0001-6068-8220

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anthropogenic chemicals and their transformation products are increasingly found in the environment, with persistence being a major driver of chemical risk. Methods for predicting biotransformation products and dissipation kinetics are needed to help regulators identify potentially persistent chemicals and prevent their release to the market and eventually to the environment. Leveraging machine learning and artificial intelligence is a promising avenue to tackle this problem. However, predictive models are only as good as the data used to train them, calling for large, high-quality data sets of biotransformation pathways and kinetics, which are currently lacking. The objectives of this Global Perspective are to (i) emphasize the importance of effectively communicating biotransformation data on chemical contaminants in the environment, (ii) describe specific components of reporting biotransformation pathways in a findable, accessible, interoperable, and reusable (FAIR) format, and (iii) provide a standardized tool for researchers to use for reporting their biotransformation data, with the intent to boost the quality and quantity of available biotransformation data. We demonstrate the application of our reporting tool for the case of perfluoroalkyl and polyfluoroalkyl substances (PFASs) as a means to develop a PFAS biotransformation database, thereby illustrating how the research community could profit from standard biotransformation data reporting.

Indexed as

Anthropogenic chemicalsbiotransformationFAIRPFASs

Identifiers

PMID41246183
PMCPMC12613814

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.