Evidence map›Paper›PMID 41245488›Full record

ArticleMolecular therapy. Nucleic acids2025

Integrated multi-omics profiling uncovers miRNA-guided regulatory networks after spinal cord injury in rats.

Ruslan A Klassen, Sarka Chytilova, Ivan Arzhanov, Daniel Zucha, Eva Rohlova, Peter Androvic, Pavel Abaffy, Lucia Urdzikova-Machova, Mikael Kubista, Nataliya Romanyuk and 1 more

Abstract read
In one paragraph

Article in Molecular therapy. Nucleic acids, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. miR-24-3p promotes spinal cord injury repair in rats by inhibiting ferroptosisNan fang yi ke da xue xue bao = Journal of Southern Medical University · 2026
    Article
  3. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ruslan A KlassenLaboratory of Glial Biology and Omics Technologies, Institute of Biotechnology of the Czech Academy of Sciences - BIOCEV, 252 50 Vestec, Czech Republic.
Sarka ChytilovaLaboratory of Gene Expression, Institute of Biotechnology of the Czech Academy of Sciences - BIOCEV, 252 50 Vestec, Czech Republic.
Ivan ArzhanovDepartment of Neuroregeneration, Institute of Experimental Medicine of the Czech Academy of Sciences, Prague, Czech Republic.
Daniel ZuchaLaboratory of Glial Biology and Omics Technologies, Institute of Biotechnology of the Czech Academy of Sciences - BIOCEV, 252 50 Vestec, Czech Republic.
Eva RohlovaGeneCore Facility, Institute of Biotechnology of the Czech Academy of Sciences - BIOCEV, 252 50 Vestec, Czech Republic.
Peter AndrovicLaboratory of Gene Expression, Institute of Biotechnology of the Czech Academy of Sciences - BIOCEV, 252 50 Vestec, Czech Republic.
Pavel AbaffyLaboratory of Glial Biology and Omics Technologies, Institute of Biotechnology of the Czech Academy of Sciences - BIOCEV, 252 50 Vestec, Czech Republic.
Lucia Urdzikova-MachovaDepartment of Neuroregeneration, Institute of Experimental Medicine of the Czech Academy of Sciences, Prague, Czech Republic.
Mikael KubistaLaboratory of Gene Expression, Institute of Biotechnology of the Czech Academy of Sciences - BIOCEV, 252 50 Vestec, Czech Republic.
Nataliya RomanyukDepartment of Neuroregeneration, Institute of Experimental Medicine of the Czech Academy of Sciences, Prague, Czech Republic.
Lukas ValihrachLaboratory of Glial Biology and Omics Technologies, Institute of Biotechnology of the Czech Academy of Sciences - BIOCEV, 252 50 Vestec, Czech Republic.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spinal cord injury (SCI) is a debilitating condition with no effective treatment. The injury triggers a complex cascade of molecular and cellular events that drive both damage and repair processes. To explore these mechanisms, we performed a comprehensive multi-omics analysis in a rat compression model of SCI, focusing on the acute phase. Transcriptomic profiling revealed extensive gene dysregulation, highlighting early inflammation, neuronal death, and synaptic dysfunction, followed by the initiation of reparative processes. Cell type composition analysis showed a rapid infiltration of peripheral immune cells; activation of microglia; and loss of neurons, astrocytes, and oligodendrocytes. Importantly, we provide experimental support for predicted microRNA (miRNA)-mRNA-protein interactions, offering a foundation for further mechanistic studies. miRNA profiling uncovered a highly dysregulated miRNA landscape, with the miR-17∼92 cluster emerging as a key regulator of neurogenesis, synaptic activity, and cell survival. Integrative miRNA-mRNA-protein analysis identified potential therapeutic targets, including miR-20a, whose inhibition

Indexed as

microRNAMT: Non-coding RNAsmulti-omicsrat modelspinal cord injury

Identifiers

PMID41245488
PMCPMC12617769

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.