Evidence map›Paper›PMID 41244595›Full record

ArticleJournal of pathology informatics2025

Retrieval-augmented generation for interpreting clinical laboratory regulations using large language models.

Suparna Nanua, Raven Steward, Benjamin Neely, Michael Datto, Kenneth Youens

Abstract read
In one paragraph

Article in Journal of pathology informatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Suparna NanuaClinical Informatics Fellowship Program, Baylor Scott & White Health, Round Rock, TX, USA.
Raven StewardDepartment of Pathology and Laboratory Medicine, Baylor Scott & White Health, Temple, TX, USA.
Benjamin NeelyDepartment of Pathology, Duke University School of Medicine, Durham, NC, USA.
Michael DattoDepartment of Pathology, Duke University School of Medicine, Durham, NC, USA.
Kenneth YouensClinical Informatics Fellowship Program, Baylor Scott & White Health, Round Rock, TX, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Large language models (LLMs) have demonstrated strong performance on general knowledge tasks, but they have important limitations as standalone tools for question answering in specialized domains where accuracy and consistency are critical. Retrieval-augmented generation (RAG) is a strategy in which LLM outputs are grounded in dynamically retrieved source documents, offering advantages in accuracy, explainability, and maintainability. We developed and evaluated a custom RAG system called Raven, designed to answer laboratory regulatory questions using the part of the Code of Federal Regulations (CFR) pertaining to laboratory (42 CFR Part 493) as an authoritative source. Raven employed a vector search pipeline and a LLM to generate grounded responses via a chatbot-style interface. The system was tested using 103 synthetic laboratory regulatory questions, 88 of which were explicitly addressed in the CFR. Compared to answers generated manually by a board-certified pathologist, Raven's responses were judged to be totally complete and correct in 92.0% of those 88 cases, with little irrelevant content and a low potential for regulatory or medical error. Performance declined significantly on questions not addressed in the CFR, confirming the system's grounding in the source documents. Most suboptimal responses were attributable to faulty source document retrieval rather than model hallucination or misinterpretation. These findings demonstrate that a basic RAG system can produce useful, accurate, and verifiable answers to complex regulatory questions. With appropriate safeguards and with thoughtful integration into user workflows, tools like Raven may serve as valuable decision-support systems in laboratory medicine and other knowledge-intensive healthcare domains.

Indexed as

Clinical decision supportLaboratory administrationLarge language modelRetrieval-augmented generation

Identifiers

PMID41244595
PMCPMC12616094

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.