Evidence map›Paper›PMID 41243980›Full record

ArticleNucleic acids research2026

MicroAgroBiome: a toolkit for exploring specialized metabolism and ecological interactions in rhizosphere microbiomes of cultivated crops.

César Aguilar, Fernando Fontove-Herrera, Anton Pashkov, David A García-Estrada, Haydeé Contreras-Peruyero, Shaday Guerrero-Flores, Obed Ramírez-Sánchez, Nelly Sélem-Mojica

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

César AguilarIndustrial Genomics Laboratory, Centro de Biotecnología FEMSA, Escuela de Ingeniería y Ciencias, Tecnológico de Monterrey, Av. Eugenio Garza Sada 2501 Sur, Nuevo León C.P. 64700, México.ORCID 0000-0001-7044-2419
Fernando Fontove-HerreraC3 Consensus, León, Guanajuato, 37266, México.
Anton PashkovEscuela Nacional de Estudios Superiores, Unidad Morelia, Antigua Carretera a Pátzcuaro 8701 Col. Ex Hacienda de San José de la Huerta, C.P. 58089 Morelia, Michoacán, México.ORCID 0009-0005-7232-4375
David A García-EstradaDepartamento de Medio Ambiente y Energía, Centro de Investigación en Materiales Avanzados, Miguel de Cervantes 120, Complejo Industrial Chihuahua, Chihuahua C.P. 31136, México.ORCID 0009-0007-1169-5329
Haydeé Contreras-PeruyeroCentro de Ciencias Matemáticas, Universidad Nacional Autónoma de México, Antigua Carretera a Pátzcuaro 8701, Col. Ex Hacienda de San José de la Huerta, C.P. 58089 Morelia, Michoacán, México.ORCID 0000-0002-4820-1798
Shaday Guerrero-FloresCentro de Ciencias Matemáticas, Universidad Nacional Autónoma de México, Antigua Carretera a Pátzcuaro 8701, Col. Ex Hacienda de San José de la Huerta, C.P. 58089 Morelia, Michoacán, México.ORCID 0009-0000-7112-8018
Obed Ramírez-SánchezSoil Genomics & Discovery Department, Solena Inc., Av. Olímpica 3020-D, Villas de San Juan, León 37295, México.
Nelly Sélem-MojicaCentro de Ciencias Matemáticas, Universidad Nacional Autónoma de México, Antigua Carretera a Pátzcuaro 8701, Col. Ex Hacienda de San José de la Huerta, C.P. 58089 Morelia, Michoacán, México.ORCID 0000-0003-1697-3862

Funding

Secretaría de Ciencia, Innovación, Tecnología e Innovación (SECIHTI) 320237Secretaría de Ciencia, Innovación, Tecnología e Innovación (SECIHTI) Postdoctoral Fellowship 2025Universidad Nacional Autónoma de México IN114323
6 · The paper itself

Abstract

The microbiome is crucial to agroecosystems, as it influences plant nutrition, resilience, and overall health. Recent advances in metagenomics have expanded our understanding of plant-microbe interactions, yet curated, high-resolution data capturing the global diversity of crop-associated microbiomes remain scarce. To fill this gap, we developed MicroAgroBiome, a publicly accessible platform that offers standardized taxonomic and functional data, mainly from the rhizosphere microbiomes of agriculturally important crops. The platform integrates 554 metagenomes from 28 crops and soil sample health, advancing microbiome-informed agricultural strategies. It also underscores Latin America's growing leadership in agricultural microbiome research. MicroAgroBiome is available at https://agrobiom.matmor.unam.mx.

Indexed as

Crops, AgriculturalMetagenomicsMicrobiotaRhizosphereMetagenomeSoftwareSoil Microbiology

Identifiers

PMID41243980
PMCPMC12807682

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.