Evidence map›Paper›PMID 41240143›Full record

ArticleMetabolomics : Official journal of the Metabolomic Society2025

Comprehensive and quantitative urinary metabolomic profiling for improved characterization of diabetic nephropathy.

Yamilé López-Hernández, Juan José Oropeza-Valdez, Valeria Maeda-Gutiérrez, Jiamin Zheng, Rupasri Mandal, Juan Ernesto López-Ramos, José de la Cruz Moreira Hernández, Elena Jaime-Sánchez, María Fernanda Romo-García, José Antonio Enciso Moreno and 1 more

Abstract read
In one paragraph

Article in Metabolomics : Official journal of the Metabolomic Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

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2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

11 authors.

Yamilé López-Hernández *SECIHTI-Metabolomics and Proteomics Laboratory, Academic Unit of Biological Sciences, Autonomous University of Zacatecas, Zacatecas, Mexico.
Juan José Oropeza-Valdez *Centro de Ciencias de la Complejidad, Universidad Nacional Autónoma de México (UNAM), Mexico City, Mexico. juan.oropeza@c3.unam.mx.
Valeria Maeda-GutiérrezUnidad Académica de Ingeniería Eléctrica, Universidad Autónoma de Zacatecas, Jardín Juárez 147, Centro, Zacatecas, Mexico.
Jiamin ZhengDepartment of Biological Sciences, University of Alberta, Edmonton, AB, T6G1C9, Canada.
Rupasri MandalDepartment of Biological Sciences, University of Alberta, Edmonton, AB, T6G1C9, Canada.
Juan Ernesto López-RamosUnidad Profesional Interdisciplinaria de Ingeniería Campus Zacatecas, Instituto Politécnico Nacional, Zacatecas, Mexico.
José de la Cruz Moreira HernándezHospital General de Zona No. 1, Dr Emilio Varela Luján, Instituto Mexicano del Seguro Social, Zacatecas, Zacatecas, Mexico.
Elena Jaime-SánchezÁrea de Ciencias de La Salud, Campus UAZ Siglo XXI, Universidad Autónoma de Zacatecas, Zacatecas, Zacatecas, Mexico.
María Fernanda Romo-GarcíaLaboratorio de Inmunotoxicología, Unidad Académica de Ciencias Químicas, Universidad Autónoma de Zacatecas, Campus UAZ Siglo XXI, Zacatecas, Mexico.
José Antonio Enciso MorenoFacultad de Química, Posgrado Química Clínica Diagnóstica, Universidad Autónoma de Querétaro, Santiago de Querétaro, Mexico.
David S WishartDepartment of Biological Sciences, University of Alberta, Edmonton, AB, T6G1C9, Canada.

Funding

Genome Alberta TMIC MC4Instituto Mexicano del Seguro Social FIS/IMSS/PROT/PRIO/18/070The Canada Foundation for Innovation MSIF 35456
6 · The paper itself

Abstract

introductionDiabetic nephropathy (DN) is a major cause of chronic kidney disease and end-stage renal failure worldwide. The current diagnostic marker, albuminuria, lacks specificity and often detects renal damage only at advanced stages.

objectivesThis study aimed to characterize urinary metabolic alterations associated with DN and explore metabolite panels with diagnostic potential.

methodsA targeted urinary metabolomics analysis was performed using the validated TMIC Urine MEGA Assay, quantifying 268 metabolites in 60 participants (20 controls, 20 type 2 diabetes mellitus [DM-2], and 20 DN patients). Data were analyzed by Partial Least Squares Discriminant Analysis (PLS-DA) for visualization, and penalized regression algorithms [Least Absolute Shrinkage and Selection Operator (LASSO) and Elastic Net (EN) with a Genetic Algorithm (GA)] followed by logistic regression (LR) modeling to identify potential discriminative variables.

resultsDN patients showed marked alterations in metabolites related to oxidative stress, mitochondrial dysfunction, and inflammation. Twenty-four of 86 quantified uremic toxins differed significantly between DN and comparison groups. The LASSO-derived model identified β-alanine, kynurenine, glucose and argininic acid as key discriminants (AUC = 0.905, 10-fold CV), while inclusion of GFR and additional metabolites (2-hydroxybutyric acid, shikimic acid) improved performance (AUC = 0.96).

conclusionsQuantitative urinary metabolomics revealed metabolic perturbations reflective of DN pathophysiology and identified candidate metabolite panels with potential for non-invasive disease characterization. These findings, though preliminary, provide a foundation for validation in larger, longitudinal cohorts and for integrating urinary metabolomics into precision diagnostics for diabetic kidney disease.

Indexed as

Diabetic NephropathiesMetabolomeMetabolomicsAdultAgedBiomarkersDiabetes Mellitus, Type 2FemaleHumansMaleMiddle AgedOxidative StressBiomarkersBiomarkersDiabetesDiabetic nephropathyMetaboliteTargeted metabolomicsUrine

Identifiers

PMID41240143
PMCPMC12619831

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.