Evidence map›Paper›PMID 41238729›Full record

ArticleScientific reports2025

Shotgun metagenomics of the vaginal microbiome in cervical shortening and preterm birth risk.

Keun-Young Lee, Seung-Ho Shin, Goeun Park, Shin-Hae Kang, Hyun-Jung Kang, Jiye Kim, Jae Jun Lee, Ga-Hyun Son, Ji Young Hong

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Dynamic changes in the pregnancy microbiome and their role in preterm birth.Frontiers in cellular and infection microbiology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Keun-Young Lee *Division of Maternal-Fetal Medicine, Department of Obstetrics and Gynecology, Hallym University College of Medicine, Kangnam Sacred Heart Hospital, Seoul, Republic of Korea.
Seung-Ho Shin *Institute of New Frontier Research Team, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Goeun ParkInstitute of New Frontier Research Team, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Shin-Hae KangInstitute of New Frontier Research Team, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Hyun-Jung KangInstitute of New Frontier Research Team, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Jiye KimDivision of Maternal-Fetal Medicine, Department of Obstetrics and Gynecology, Hallym University College of Medicine, Kangnam Sacred Heart Hospital, Seoul, Republic of Korea.
Jae Jun LeeInstitute of New Frontier Research Team, College of Medicine, Hallym University, Chuncheon, Republic of Korea.
Ga-Hyun SonDivision of Maternal-Fetal Medicine, Department of Obstetrics and Gynecology, Hallym University College of Medicine, Kangnam Sacred Heart Hospital, Seoul, Republic of Korea. ntr5017@naver.com.
Ji Young HongInstitute of New Frontier Research Team, College of Medicine, Hallym University, Chuncheon, Republic of Korea. mdhong@hallym.or.kr.

Funding

Korea government (the Ministry of Science and ICT, the Ministry of Trade, Industry and Energy, the Ministry of Health & Welfare, the Ministry of Food and Drug Safety) RS-2023-00252948Korea Health Industry Development Institute (KHIDI) HI21C1624
6 · The paper itself

Abstract

Preterm birth (PTB), a leading cause of neonatal morbidity and mortality, is frequently associated with premature cervical remodeling and vaginal microbiome dysbiosis. Cervical shortening in mid-pregnancy is a well-established risk factor for spontaneous PTB (sPTB), yet the microbial signatures underlying this condition remain underexplored, especially in Asian populations. In this study, we conducted shotgun metagenomic analysis of vaginal samples from 35 East Asian pregnant women with a short cervix and 12 with normal cervical length. Species-level taxonomic profiling and functional pathway analysis revealed reduced Lactobacillus dominance, increased microbial diversity, and enrichment of non-optimal CST IV species, such as Fannyhessea vaginae, Bifidobacterium breve, and Mycobacterium canetti in the short cervix group. Functional profiling showed group differences in pathways related to folate biosynthesis, carbohydrate metabolism, and epithelial barrier regulation. Among women with a short cervix, those who delivered preterm had vaginal microbiomes enriched in opportunistic pathogens, including Peptoniphilus equinus, Treponema spp., and Staphylococcus hominis. Conversely, B. breve, Lactobacillus gasseri, and Lactobacillus paragasseri were associated with full-term delivery. Functions related to glycosylation, structural stability, and degradation of cervical mucin were enriched in the sPTB group. Network analysis identified distinct microbial interactions between Lactobacillus-dominated clusters and CST IV-associated taxa, providing ecological insights that may reflect competitive dynamics and potential influences on cervicovaginal barrier integrity. These findings enhance our understanding of the taxonomic and functional profiles of the vaginal microbiome linked to cervical shortening and sPTB, contributing to improved risk stratification and management strategies for PTB, particularly in women with cervical shortening.

Indexed as

Cervix UteriMetagenomicsPremature BirthVaginaAdultCervical Length MeasurementDNA, BacterialEast Asian PeopleFemaleHumansMicrobiotaPregnancyProspective StudiesRisk AssessmentRisk FactorsDNA, BacterialCervical shorteningCervicovaginal microbiomePregnancy outcomesShotgun metagenomicsSpontaneous preterm birth

Identifiers

PMID41238729
PMCPMC12618687

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