Evidence map›Paper›PMID 41238538›Full record

ArticleNature communications2025

Conserved genetic markers reveal widespread diatom sexual reproduction in the global ocean.

Gust Bilcke, Lucia Campese, Rossella Annunziata, Luz Amadei Martínez, Camilla Borgonuovo, Nadine Rijsdijk, Peter Chaerle, Koen Van den Berge, Sofie D'hondt, Daniele Iudicone and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Gust Bilcke *Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-9499-2295
Lucia Campese *Stazione Zoologica Anton Dohrn, Naples, Italy.ORCID http://orcid.org/0000-0002-3543-738X
Rossella AnnunziataStazione Zoologica Anton Dohrn, Naples, Italy.
Luz Amadei MartínezProtistology and Aquatic Ecology, Department of Biology, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-5960-7972
Camilla BorgonuovoStazione Zoologica Anton Dohrn, Naples, Italy.
Nadine RijsdijkDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-7868-0112
Peter ChaerleProtistology and Aquatic Ecology, Department of Biology, Ghent University, Ghent, Belgium.
Koen Van den BergeStatistics and Decision Sciences, Johnson and Johnson, Beerse, Belgium.ORCID http://orcid.org/0000-0002-1833-8478
Sofie D'hondtProtistology and Aquatic Ecology, Department of Biology, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0002-2128-0553
Daniele IudiconeStazione Zoologica Anton Dohrn, Naples, Italy.
Marina MontresorStazione Zoologica Anton Dohrn, Naples, Italy.ORCID http://orcid.org/0000-0002-2475-1787
Maria Immacolata FerranteStazione Zoologica Anton Dohrn, Naples, Italy. Mariella.Ferrante@szn.it.ORCID http://orcid.org/0000-0002-8102-8018
Klaas VandepoeleDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium. Klaas.Vandepoele@psb.ugent.be.ORCID http://orcid.org/0000-0003-4790-2725
Wim VyvermanProtistology and Aquatic Ecology, Department of Biology, Ghent University, Ghent, Belgium. Wim.Vyverman@UGent.be.ORCID http://orcid.org/0000-0003-0850-2569

Funding

EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) AtlantECO (862923)EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) MARCO-BOLO (101082021)Fonds Wetenschappelijk Onderzoek (Research Foundation Flanders) 11L2323NFonds Wetenschappelijk Onderzoek (Research Foundation Flanders) 1228423N
6 · The paper itself

Abstract

Sexual reproduction is a nearly universal characteristic of the eukaryotic life cycle, yet it is rarely observed in natural populations of micro-eukaryotes. Sex is particularly relevant for diatoms, a key group of marine and freshwater phytoplankton, where sexual reproduction counters a progressive cell size reduction due to cellular division. Here, we leveraged controlled sex transcriptome experiments of four diatom species to develop a robust method for in situ monitoring of sexual reproduction events. The resulting panel of conserved marker genes was validated for specificity and sensitivity using metatranscriptomic profiling of a natural estuarine community undergoing massive sexual reproduction of multiple species in response to increased salinity. Analysis of metatranscriptomic data linked with Metagenome-Assembled Genomes from the Tara Oceans expedition revealed widespread and coordinated expression of these markers across nine diatom genera, complemented by observations of sexual stages in automated imaging resources. Our results reveal that diatom sexual reproduction is more widespread in the global ocean than previously thought, encompassing both dominant bloom-forming species and rare taxa. Our panel of markers to detect sexual reproduction in natural environments paves the road to better understand the interplay between endogenous and environmental controls of this pivotal process, essential for the diatoms' evolutionary success.

Indexed as

DiatomsGene Expression ProfilingGenetic MarkersMetagenomeOceans and SeasPhytoplanktonReproductionSalinitySeawaterTranscriptomeGenetic Markers

Identifiers

PMID41238538
PMCPMC12618581

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.