Evidence map›Paper›PMID 41237920›Full record

ArticleJournal of biomedical informatics2025

A method for characterizing disease progression from acute kidney injury to chronic kidney disease.

Yilu Fang, Jordan G Nestor, Casey N Ta, Jerard Z Kneifati-Hayek, Chunhua Weng

Abstract read
In one paragraph

Article in Journal of biomedical informatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yilu FangDepartment of Biomedical Informatics, Columbia University, New York, NY, USA.
Jordan G NestorDepartment of Medicine, Division of Nephrology, Columbia University, New York, NY, USA.
Casey N TaDepartment of Biomedical Informatics, Columbia University, New York, NY, USA.
Jerard Z Kneifati-HayekDepartment of Medicine, Division of General Medicine, Columbia University, New York, NY, USA.
Chunhua WengDepartment of Biomedical Informatics, Columbia University, New York, NY, USA. Electronic address: cw2384@cumc.columbia.edu.

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Institutional Career Development CoreKL2TR001874 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GENKINGER, JEANINE M., SHIMBO, DAICHI · 2016 to 2025
$13.6M
OMOP information model for eMERGE phenotypingU01HG008680 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Wendy K Chung, GEORGE M HRIPCSAK · 2015 to 2026
$13.3M
Fair Phenotype Annotation and Genomic ReinterpretationR01HG013031 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Wendy K Chung, CHUNHUA WENG · 2023 to 2026
$3.5M
Deep phenotyping in Electronic Health Records for Genomic MedicineR01LM012895 · NLM · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WANG, KAI, WENG, CHUNHUA · 2018 to 2021
$3.3M
Translator Red Knowledge (TReK)OT2TR003434 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DUMONTIER, MICHEL, TA, CASEY NGHIA · 2020 to 2024
$2.3M
Structural regulation of megalin recycling in the proximal tubuleK08DK132511 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ANDREW S BEENKEN · 2023 to 2026
$666k
Digital Tools for Precision NephrologyK08DK138280 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Jordan Gabriela Nestor · 2024 to 2026
$500k
NCATS NIH HHS KL2 TR001874NCATS NIH HHS OT2 TR003434NCATS NIH HHS UL1 TR001873NHGRI NIH HHS R01 HG013031NHGRI NIH HHS U01 HG008680NIDDK NIH HHS K08 DK132511NIDDK NIH HHS K08 DK138280NLM NIH HHS R01 LM012895
6 · The paper itself

Abstract

objectivePatients with acute kidney injury (AKI) are at high risk of developing chronic kidney disease (CKD), but identifying those at greatest risk remains challenging. We used electronic health record (EHR) data to dynamically track AKI patients' clinical evolution and characterize AKI-to-CKD progression.

methodsPost-AKI clinical states were identified by clustering patient vectors derived from longitudinal medical codes and creatinine measurements. Transition probabilities between states and progression to CKD were estimated using multi-state modeling. After identifying common post-AKI trajectories, CKD risk factors in AKI subpopulations were identified through survival analysis.

resultsOf 20,699 patients with AKI at admission, 3,491 (17 %) developed CKD. We identified fifteen distinct post-AKI states, each with different probabilities of CKD development. Most patients (75 %, n = 15,607) remained in a single state or made only one transition during the study period. Both established (e.g., AKI severity, diabetes, hypertension, heart failure, liver disease) and novel CKD risk factors, with their impact varying across these clinical states.

conclusionThis study demonstrates a data-driven approach for identifying high-risk AKI patients, supporting the development of decision-support tools for early CKD detection and intervention.

Indexed as

Acute Kidney InjuryRenal Insufficiency, ChronicAgedCreatinineDisease ProgressionElectronic Health RecordsFemaleHumansMaleMiddle AgedRisk FactorsCreatinineAcute kidney injuryChronic kidney diseaseMulti-state modelingNatural language processingSurvival analysis

Identifiers

PMID41237920
PMCPMC12679715

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.