Evidence map›Paper›PMID 41235702›Full record

ArticleSmall (Weinheim an der Bergstrasse, Germany)2025

Enhancing the miRNA Detection Sensitivity of DNA Origami Book Biosensors Using Lock Modifications and a Polymer Additive.

Ivana Domljanovic, Samet Kocabey, Guillermo P Acuna, Curzio Ruegg

Abstract read
In one paragraph

Article in Small (Weinheim an der Bergstrasse, Germany), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ivana DomljanovicLaboratory of Experimental and Translational Oncology, Department of Oncology, Microbiology and Immunology, Faculty of Science and Medicine, University of Fribourg, Chemin du Musée 18, PER17, Fribourg, 1700, Switzerland.ORCID 0000-0003-1992-3131
Samet KocabeyLaboratory of Experimental and Translational Oncology, Department of Oncology, Microbiology and Immunology, Faculty of Science and Medicine, University of Fribourg, Chemin du Musée 18, PER17, Fribourg, 1700, Switzerland.ORCID 0000-0002-3159-4855
Guillermo P AcunaNCCR Bio-inspired Materials, University of Fribourg, Fribourg, 1700, Switzerland.ORCID 0000-0001-8066-2677
Curzio RueggLaboratory of Experimental and Translational Oncology, Department of Oncology, Microbiology and Immunology, Faculty of Science and Medicine, University of Fribourg, Chemin du Musée 18, PER17, Fribourg, 1700, Switzerland.ORCID 0000-0001-9137-7695

Funding

HORIZON EUROPE European Research Council Marie Skłodowska-Curie grant agreement no. 889031Innosuisse - Schweizerische Agentur für Innovationsförderung Innosuisse Project no. 106.330 IP-LSNational Center of Competence in Research Bio-Inspired Materials, University of Fribourg 51NF40_182881Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 200021_184687
6 · The paper itself

Abstract

DNA origami-based biosensors provide a powerful and programmable platform for sensitive and specific molecular diagnostics. In this study, a dynamic DNA origami book biosensor is validated for direct detection of microRNA21 (miR-21) in complex biological fluids, including human serum and plasma. Two optical readouts are engineered and tested: Förster resonance energy transfer (FRET) and fluorescence quenching using precisely arranged donor-acceptor fluorophore pairs. To improve sensitivity, detection occurs under varied conditions, including modifications to the lock mechanism (fluorine-modified bases and locked nucleic acid) and the addition of a biocompatible polymer, diethylene glycol (DEG). The biosensor maintains specificity in spiked serum, plasma, and clinical plasma samples from breast cancer patients. Single origami nanostructure detection experiments show that target miRNAs are identified within 10 min, with limits of detection (LoD) of 0.69 pm in buffer with LNA, 8.86 pm in 100% serum, and 23.24 pm in 100% plasma, without enzymatic amplification. Importantly, simultaneous detection of miR-21 and miR-7a in clinical plasma samples is demonstrated, underscoring the platform's potential for personalized diagnostics and liquid biopsy applications. These results show that tuning the lock mechanism and adding polymers enhances sensitivity and enables adaptable performance, advancing nanotechnology-based biomarker profiling, including diverse microRNA detection.

Indexed as

Biosensing TechniquesDNAMicroRNAsPolymersFluorescence Resonance Energy TransferHumansLimit of DetectionNanostructuresOligonucleotidesDNAlocked nucleic acidMicroRNAsMIRN21 microRNA, humanOligonucleotidesPolymersbreast cancerDNA origami biosensorFRETmiRNAquenching

Identifiers

PMID41235702
PMCPMC12747634

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.